FC875390

Overview
NameFC875390
Unique NameFC875390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTF_ARATH (Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.227e-102
Identity = 175/222 (78.83%), Postives = 199/222 (89.64%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            TSFA+R+TLEPWLV+E+RI+GD +LIS+LASGLPTSE+SEH  DLEAL+S  LS  +P+DL IGVFSTANNFKRRMAVRRTWMQY +VRSG VAVRFFVGLHK+ +VN ELWNEARTYGD+QLMPFVDYY+LI+WKTLAICIFGT+V SAKF+MKTDDDAFVRVDEVL SL   N   GL+YGLINS+S+P RNP+SKWYIS EEWPEE YPPWAHGPGY+V
Sbjct:  334 TSFAFRDTLEPWLVSEIRITGDFRLISILASGLPTSEESEHVVDLEALKSPTLSPLRPLDLVIGVFSTANNFKRRMAVRRTWMQYDDVRSGRVAVRFFVGLHKSPLVNLELWNEARTYGDVQLMPFVDYYSLISWKTLAICIFGTEVDSAKFIMKTDDDAFVRVDEVLLSLSMTNNTRGLIYGLINSDSQPIRNPDSKWYISYEEWPEEKYPPWAHGPGYIV 555          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTG_ARATH (Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.191e-74
Identity = 133/222 (59.91%), Postives = 171/222 (77.03%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            TSFAYRE LEPWLV+ V++SG LK++SVLA+ LP  +D       E L++  LS  + ++L +GVFST NNFKRRMA+RR+WMQY  VRSG VAVRF +GLH N+ VN E+W E++ YGDIQ MPFVDYY L++ KT+A+CI GT V+ AK++MKTDDDAFVR+DE+L+SL+     S LLYGLI+ +S P R   SKW+I  EEWP ++YPPWAHGPGY++
Sbjct:  314 TSFAYREKLEPWLVSAVKVSGGLKILSVLATRLPIPDDHASLIIEEKLKAPSLSGTR-IELLVGVFSTGNNFKRRMALRRSWMQYEAVRSGKVAVRFLIGLHTNEKVNLEMWRESKAYGDIQFMPFVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDAFVRIDELLSSLEE-RPSSALLYGLISFDSSPDREQGSKWFIPKEEWPLDSYPPWAHGPGYII 533          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTH_ARATH (Probable beta-1,3-galactosyltransferase 17 OS=Arabidopsis thaliana GN=B3GALT17 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.848e-48
Identity = 96/225 (42.67%), Postives = 140/225 (62.22%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            TSF YR          + + G++ + SV A+ LP++  S   +   +++ +   P    KPV+LFIG+ S  N+F  RMAVR++WMQ   VRS  V  RFFV LH  + VN +L  EA  +GDI ++P++D+Y+L+  KT+AIC +G + V+AK+VMK DDD FVRVD V+   +++     L  G IN   +P R    KW ++ EEWPEE YPP+A+GPGY++
Sbjct:  364 TSFPYRTGFVLEDATGLAVKGNIDVHSVYAASLPSTNPSFAPQKHLEMQRIWKAPSLPQKPVELFIGILSAGNHFAERMAVRKSWMQQKLVRSSKVVARFFVALHARKEVNVDLKKEAEYFGDIVIVPYMDHYDLVVLKTVAICEYGVNTVAAKYVMKCDDDTFVRVDAVIQEAEKVKGRESLYIGNINFNHKPLRT--GKWAVTFEEWPEEYYPPYANGPGYIL 586          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTJ_ARATH (Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.025e-47
Identity = 100/225 (44.44%), Postives = 138/225 (61.33%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            TSF YR          + I+GD+ + SV A  LPTS  S   +   +L +    P    + VD+FIG+ S  N+F  RMAVRR+WMQ+  V+S  V  RFFV LH  + VN EL  EA  +GDI ++P++D Y+L+  KT+AIC +G   ++AKF+MK DDD FV+VD VL+  K+      L  G IN   +P R  + KW ++ EEWPEE YPP+A+GPGY++
Sbjct:  371 TSFPYRTGFTLEDATGLTINGDIDVHSVFAGSLPTSHPSFSPQRHLELSSNWQAPSLPDEQVDMFIGILSAGNHFAERMAVRRSWMQHKLVKSSKVVARFFVALHSRKEVNVELKKEAEFFGDIVIVPYMDSYDLVVLKTVAICEYGAHQLAAKFIMKCDDDTFVQVDAVLSEAKKTPTDRSLYIGNINYYHKPLR--QGKWSVTYEEWPEEDYPPYANGPGYIL 593          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTI_ARATH (Probable beta-1,3-galactosyltransferase 18 OS=Arabidopsis thaliana GN=B3GALT18 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.061e-44
Identity = 94/225 (41.78%), Postives = 134/225 (59.56%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            TSF YR          + ++GD+ + SV  + LPTS  S   +   +L      P+    PV++FIG+ S  N+F  RMAVR++WMQ+  + S  V  RFFV LH  + VN EL  EA  +GDI L+P++D Y+L+  KT+AIC  G    SAK++MK DDD FV++  V+  +K++     L  G +N   +P R    KW ++ EEWPEE YPP+A+GPGYV+
Sbjct:  362 TSFPYRTGFTLEDATGLTVNGDIDVHSVFVASLPTSHPSFAPQRHLELSKRWQAPVVPDGPVEIFIGILSAGNHFSERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGDIVLVPYMDSYDLVVLKTVAICEHGALAFSAKYIMKCDDDTFVKLGAVINEVKKVPEGRSLYIGNMNYYHKPLRG--GKWAVTYEEWPEEDYPPYANGPGYVL 584          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GTK_ARATH (Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.820e-43
Identity = 89/225 (39.56%), Postives = 130/225 (57.78%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVV 668
            +SF YR          + ++GD+ + S+ A+ L TS  S   +   +  +    P     P  LF+GV S  N+F  RMAVR+TWMQ+  ++S  V  RFFV L+  + VN  L  EA  +GDI ++PF+D Y L+  KT+AIC FG   V+A ++MK DDD F+RV+ +L  +  ++    L  G +N   RP R    KW ++ EEWPE  YPP+A+GPGY++
Sbjct:  375 SSFPYRPGFTIEDATGLAVTGDVDIHSIHATSLSTSHPSFSPQKAIEFSSEWKAPPLPGTPFRLFMGVLSATNHFSERMAVRKTWMQHPSIKSSDVVARFFVALNPRKEVNAMLKKEAEYFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAPYIMKCDDDTFIRVESILKQIDGVSPEKSLYMGNLNLRHRPLRT--GKWTVTWEEWPEAVYPPYANGPGYII 597          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT5_GORGO (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gorilla gorilla gorilla GN=B3GALT5 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 57/169 (33.73%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E+R +GDI    F+D Y  +T KT+     G + V      A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV
Sbjct:   56 PPFLVLLVTSSHKQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESRRHGDIIQKDFLDVYYNLTLKTM----MGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYV 220          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT5_PANTR (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan troglodytes GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E++ +GDI    F+D Y  +T KT+     G + V      A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV
Sbjct:   56 PPFLVLLVTSSHRQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTM----MGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYV 220          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT5_PANPA (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan paniscus GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E++ +GDI    F+D YYNL     + I         A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV
Sbjct:   56 PPFLVLLVTSSHKQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDGYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYV 220          
BLAST of FC875390 vs. ExPASy Swiss-Prot
Match: B3GT5_HUMAN (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYV 665
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E++ +GDI    F+D Y  +T KT+     G + V      A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV
Sbjct:   56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTM----MGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYV 220          
The following BLAST results are available for this feature:
BLAST of FC875390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
B3GTF_ARATH7.227e-10278.83Beta-1,3-galactosyltransferase 15 OS=Arabidopsis t... [more]
B3GTG_ARATH2.191e-7459.91Probable beta-1,3-galactosyltransferase 16 OS=Arab... [more]
B3GTH_ARATH7.848e-4842.67Probable beta-1,3-galactosyltransferase 17 OS=Arab... [more]
B3GTJ_ARATH1.025e-4744.44Probable beta-1,3-galactosyltransferase 19 OS=Arab... [more]
B3GTI_ARATH1.061e-4441.78Probable beta-1,3-galactosyltransferase 18 OS=Arab... [more]
B3GTK_ARATH5.820e-4339.56Probable beta-1,3-galactosyltransferase 20 OS=Arab... [more]
B3GT5_GORGO2.909e-1833.73Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gor... [more]
B3GT5_PANTR8.463e-1833.14Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
B3GT5_PANPA1.105e-1733.33Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
B3GT5_HUMAN1.105e-1733.14Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC31403D07EF CTVClemen1 Citrus clementina cDNA clone C31403D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875390 ID=FC875390; Name=FC875390; organism=Citrus clementina; type=EST; length=668bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTG
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