FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KADC_SOLTU (Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.894e-54
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALL 658
            VQWVFLGCPGVGKGTYASRLS LLGVPHIATGDLVRDEL SSGPLS QL EIV+QGKLVSDEII+NLLSKRLE+GEAKGEAGFILDGFPRTVRQAEIL  VTDIDLV+NLKL E  L+
Sbjct:   56 VQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQGKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEILTEVTDIDLVVNLKLPERVLV 173          

HSP 2 Score: 29.6462 bits (65), Expect = 1.894e-54
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  672 KKICSECGGNYNVACI 719
            ++ICSECG N+NVA I
Sbjct:  179 RRICSECGKNFNVASI 194          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KADC1_ARATH (Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.958e-52
Identity = 101/119 (84.87%), Postives = 112/119 (94.12%), Query Frame = 2
Query:  302 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALL 658
            +VQWVFLGCPGVGKGTYASRLS LLGVPHIATGDLVR+ELASSGPLS +L EIV+QGKLVSDEII++LLSKRLEAGEA+GE+GFILDGFPRT+RQAEIL  VTDIDLV+NLKL EE L+
Sbjct:   51 NVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLV 169          

HSP 2 Score: 23.483 bits (49), Expect = 4.958e-52
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  672 KKICSECGGNYNVACI 719
            ++ CS+CG  +NVA I
Sbjct:  175 RRTCSQCGKGFNVAHI 190          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THEAB (Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.603e-22
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            VFLG PG GKGTYA RL  +L +PHI+TGD+ R+ +AS   L  +++EI+ +G LV D++  +++  RL   + K   GFILDGFPRTV QA+ L+ +      D+D VI  ++ EE ++   S
Sbjct:    4 VFLGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVPDDLTNSIVKDRLSKEDCKN--GFILDGFPRTVAQAKALDEIMRSLGKDLDYVIYFEVDEEEVVKRIS 125          

HSP 2 Score: 22.3274 bits (46), Expect = 1.603e-22
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++ICS CG  YN+
Sbjct:  123 RISNRRICSNCGKIYNL 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CALS8 (Adenylate kinase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=adk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.898e-21
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  LS+  G+PHI+TGD++R+ + +   L  +  E + +G LV DEI+I ++  RL   + K   GF+LDGFPRT+ QAE LE V       ID V+N+++ +E +L   S
Sbjct:    4 IILGAPGAGKGTQAEYLSSRFGIPHISTGDILRENVKNQTELGKKAKEYMDKGLLVPDEIVIEIVKNRLMQDDCKN--GFLLDGFPRTIAQAEALEKVLADLGQKIDKVLNIEVPDEKILERMS 125          

HSP 2 Score: 21.557 bits (44), Expect = 2.898e-21
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  ++IC  CG +++V
Sbjct:  123 RMSGRRICKSCGASFHV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_TREDE (Adenylate kinase OS=Treponema denticola GN=adk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLANAS 670
            +FLG PG GKGT A  +S    +PHI+TGDL R  +     L  ++  ++  G LVSD++ I L+ +RLE  + K   GFILDGFPRT+ QA+ LE +  ID VIN  + ++ ++   S
Sbjct:    4 IFLGPPGAGKGTLAFEVSKSYKIPHISTGDLFRAAIKEQTDLGKKVKAVIDSGALVSDDLTIALVKERLERDDTK--KGFILDGFPRTIAQADALEDIVKIDSVINFDISDDEVIKRLS 120          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANCP (Adenylate kinase OS=Xanthomonas campestris pv. campestris GN=adk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSDEI++ +L  RL  G+A    GFILDG+PR V QA  L+ +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARL--GQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANCB (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=adk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSDEI++ +L  RL  G+A    GFILDG+PR V QA  L+ +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGVKAKEVMARGDLVSDEILLGMLEARL--GQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANC8 (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=adk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSDEI++ +L  RL  G+A    GFILDG+PR V QA  L+ +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARL--GQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD1_VANPO (Adenylate kinase 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ADK1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.606e-20
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLA 661
            ++ V +G PG GKGT A  L    G  H++TGD++R ++A   PL  +  +I+ QG LVSDEI++ ++ + LE   A G+ GFILDGFPRT+ QAE L+ +     T ++  + LK+ +E L+A
Sbjct:    8 IRMVLIGPPGAGKGTQAPNLVKQFGAAHLSTGDMLRSQVAKGTPLGVEAKKIMDQGGLVSDEIMVGMIKQELETNPACGK-GFILDGFPRTIPQAEKLDQMLAERGTPLEKAVELKVDDELLVA 130          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_ANATD (Adenylate kinase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=adk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.827e-20
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLANAS 670
            + LG PG GKGT A  LS    +PHI+TGD++R+ + +   L  +  E + +G LV DEI+I ++  RL   + K   GF+LDGFPRT+ QAE L+ V +     ID V+N+++ +E +L   S
Sbjct:    4 ILLGAPGAGKGTQAEYLSKRFSIPHISTGDILRENVKNETELGKKAKEYMDKGLLVPDEIVIEIVKDRLSKEDCKN--GFLLDGFPRTIAQAEALDKVLEELGQKIDKVLNIEVPDEKILERMS 125          

HSP 2 Score: 21.557 bits (44), Expect = 1.827e-20
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  ++IC  CG +++V
Sbjct:  123 RMSGRRICKNCGASFHV 139          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KADC_SOLTU1.894e-5488.14Adenylate kinase, chloroplastic OS=Solanum tuberos... [more]
KADC1_ARATH4.958e-5284.87Probable adenylate kinase 1, chloroplastic OS=Arab... [more]
KAD_THEAB1.603e-2244.35Adenylate kinase OS=Thermosipho africanus (strain ... [more]
KAD_CALS82.898e-2142.74Adenylate kinase OS=Caldicellulosiruptor saccharol... [more]
KAD_TREDE5.519e-2142.86Adenylate kinase OS=Treponema denticola GN=adk PE=... [more]
KAD_XANCP9.414e-2145.00Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANCB9.414e-2145.00Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC89.414e-2145.00Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD1_VANPO1.606e-2041.94Adenylate kinase 1 OS=Vanderwaltozyma polyspora (s... [more]
KAD_ANATD1.827e-2041.13Adenylate kinase OS=Anaerocellum thermophilum (str... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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