FC875395

Overview
NameFC875395
Unique NameFC875395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10221 contig Ccv1_Contig10221:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2)

HSP 1 Score: 365.925 bits (938), Expect = 1.101e-100
Identity = 180/215 (83.72%), Postives = 193/215 (89.77%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFMLLALIW+FDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK +EIF TG+V GSY+AMMTVIFFW +YKTDFFPR FGVATLEKTAHDDFRKLASAIYLQVS ISQALIFVTRSRSWSFVERPGI L++AF++AQL+ATLIAVYANWSF               LYNIIFYIPLDFIKFFIRYALSG+AWDLVIEQR+AFTRQ+
Sbjct:  662 IRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWVSYKTDFFPRTFGVATLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGIFLMIAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRVAFTRQK 876          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.137e-100
Identity = 179/215 (83.26%), Postives = 193/215 (89.77%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK +EIF TG+V GSY+AMMTVIFFWAAYKTDFFPR FGV+TLEKTAHDDFRKLASAIYLQVS ISQALIFVTRSRSWS+VERPG+LL+VAF++AQL+ATLIAVYANWSF               LYNI+FYIPLD IKF IRYALSG+AWDLVIEQR+AFTRQ+
Sbjct:  658 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWAAYKTDFFPRTFGVSTLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSYVERPGMLLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDIIKFLIRYALSGRAWDLVIEQRVAFTRQK 872          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 6.042e-99
Identity = 180/215 (83.72%), Postives = 192/215 (89.30%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK AEIFTTG+VLG YLAMMTVIFFWAAYKT+FFPR+FGV+TLEKTA DDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPG+LL+ AF +AQL+ATLIAVYANWSF               LYNI+ YIPLD IKF IRYALSGKAWDLV+EQRIAFTR++
Sbjct:  658 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRIFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVTYIPLDLIKFLIRYALSGKAWDLVLEQRIAFTRKK 872          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 7.891e-99
Identity = 181/215 (84.19%), Postives = 192/215 (89.30%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFMLLALIW+FDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK AEIFTTG+VLG YLAMMTVIFFWAAYKT+FFPRVFGV+TLEKTA DDFRKLASAIYLQVSTISQALIFVTRSRSWSF+ERPG+LL+VAF IAQL+ATLIAVYANWSF               LYNI+FYIPLD   F IRYALSGKAWDLVIEQRIAFTR++
Sbjct:  658 IRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFMERPGLLLVVAFFIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDLXXFLIRYALSGKAWDLVIEQRIAFTRKK 872          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.758e-98
Identity = 179/215 (83.26%), Postives = 192/215 (89.30%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK AEIFTTGIVLG YLAMMTVIFFWAAYKT+FFP VFGV+TLEKTA DDFRKLASAIYLQVS ISQALIFVTRSRSWSFVERPG LL++AF+IAQL+ATLIAVYANWSF               +YN++FYIPLD IKFFIRYALSG+AWDLV E+RIAFTR++
Sbjct:  659 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGGYLAMMTVIFFWAAYKTNFFPHVFGVSTLEKTATDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGFLLVIAFVIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWIYNLVFYIPLDIIKFFIRYALSGRAWDLVFERRIAFTRKK 873          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA2_SOLLC (Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.315e-97
Identity = 175/215 (81.40%), Postives = 192/215 (89.30%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK AEIFTTG+VLG YLAMMTVIFFWAAY+T FFPRVFGV+TL++TA DDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPG+LL+VA ++AQL+ATLIAVYA+WSF               LYN++FY PLD IKF IRYALSG+AWDLV+EQRIAFTR++
Sbjct:  406 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETQFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVALIVAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKK 620          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.071e-79
Identity = 144/215 (66.98%), Postives = 172/215 (80.00%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGF+L+ALIWK+DF PFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK  EIF TGIVLGSYLA+MTVIFFWA +KTDFF   FGV ++  + H+    + SA+YLQVS +SQALIFVTRSRSWSF+ERPG+LL+ AF++AQL+AT +AVYANW F               LY+I+FY PLD  KFFIR+ LSG+AWD ++E +IAFT ++
Sbjct:  654 IRIVLGFLLIALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMHKTDFFTDKFGVRSIRNSEHE----MMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKK 864          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 6.945e-79
Identity = 146/215 (67.91%), Postives = 170/215 (79.07%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV+GFMLLALIWKFDF PFMVLI+AILNDGTIMTISKDRVKPSPLPDSWK  EIF TG+VLG+YLA+MTV+FFWAA  TDFF   FGV ++    H+    L +A+YLQVS +SQALIFVTRSRSWS+VERPG  L+ AF +AQLIATLIAVYANW+F               LY+I+FYIPLD +KF IRY+LSG+AWD VIE + AFT ++
Sbjct:  659 IRIVMGFMLLALIWKFDFSPFMVLIVAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLAVMTVVFFWAAESTDFFSAKFGVRSISGNPHE----LTAAVYLQVSIVSQALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKK 869          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.310e-77
Identity = 144/215 (66.98%), Postives = 171/215 (79.53%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFML+ALIW+FDF PFMVLIIAILNDGTIMTISKDRVKPSP+PDSWK  EIF TG+VLG+Y+A+ TV+FFW A+ TDFF + FGV +++    +    L +A+YLQVS ISQALIFVTRSRSWSFVERPG LLL+AF+IAQL+ATLIAVYANW F               +Y+II YIPLD +KF IRYAL+GKAWD +I Q+ AFT ++
Sbjct:  657 IRIVLGFMLVALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMALTTVLFFWLAHDTDFFSKTFGVRSIQGNEEE----LMAALYLQVSIISQALIFVTRSRSWSFVERPGFLLLIAFVIAQLVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKK 867          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.310e-77
Identity = 143/212 (67.45%), Postives = 170/212 (80.19%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFT 637
            IRIVLGFML+ALIWKFDF PFMVLIIAILNDGTIMTISKDRVKPSPLPDSWK  EIF TG+VLG+YLA++TV+FFW  +KTDFF   FGV ++  T   +F+++ SA+YLQVS +SQALIFVTRSRSWSFVERPG LL+ AFL+AQL+ATLIAVYANW F               L++I+FY PLD  KFFIR+ LSG+AWD +++ + AFT
Sbjct:  654 IRIVLGFMLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGTYLALVTVVFFWLIHKTDFFTNKFGVESIRNT---EFKEM-SALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVTAFLLAQLVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFT 861          
The following BLAST results are available for this feature:
BLAST of FC875395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PMA4_ARATH1.101e-10083.72ATPase 4, plasma membrane-type OS=Arabidopsis thal... [more]
PMA11_ARATH7.137e-10083.26ATPase 11, plasma membrane-type OS=Arabidopsis tha... [more]
PMA1_SOLLC6.042e-9983.72Plasma membrane ATPase 1 OS=Solanum lycopersicum G... [more]
PMA3_NICPL7.891e-9984.19Plasma membrane ATPase 3 OS=Nicotiana plumbaginifo... [more]
PMA1_NICPL1.758e-9883.26Plasma membrane ATPase 1 OS=Nicotiana plumbaginifo... [more]
PMA2_SOLLC3.315e-9781.40Plasma membrane ATPase 2 (Fragment) OS=Solanum lyc... [more]
PMA1_ORYSJ1.071e-7966.98Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA9_ARATH6.945e-7967.91ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA8_ARATH1.310e-7766.98ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT1.310e-7767.45Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]

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Properties
Property NameValue
Genbank descriptionC31403D12EF CTVClemen1 Citrus clementina cDNA clone C31403D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875395 ID=FC875395; Name=FC875395; organism=Citrus clementina; type=EST; length=686bp
CATTCGTATTGTGCTTGGTTTCATGCTGCTGGCGCTCATATGGAAGTTTG
ACTTTCCTCCATTTATGGTGCTTATCATTGCCATCCTGAATGATGGTACA
ATTATGACAATATCAAAAGATAGGGTGAAACCGTCTCCTCTGCCAGATAG
CTGGAAGCCTGCTGAAATTTTTACAACTGGCATTGTTCTTGGCAGTTACT
TGGCAATGATGACAGTTATTTTCTTCTGGGCAGCATATAAAACAGATTTC
TTTCCGAGAGTATTTGGGGTGGCAACCCTTGAGAAAACAGCTCATGATGA
CTTCCGAAAGCTTGCCTCAGCAATTTACTTGCAAGTGAGCACTATCAGTC
AGGCCCTTATATTCGTAACACGGTCAAGAAGTTGGTCTTTCGTTGAGCGA
CCTGGTATATTGCTGCTTGTGGCTTTTCTGATTGCTCAACTGATTGCTAC
TCTGATTGCCGTTTATGCAAACTGGAGTTTTGCTGCAATTGAAGGGATTG
GGTGGGGTTGGGCCGGTGTGGTCTGGCTTTACAACATCATCTTCTACATC
CCACTTGATTTCATTAAGTTCTTCATACGCTATGCTCTGAGTGGGAAGGC
CTGGGATCTTGTTATCGAGCAGAGGATTGCTTTCACAAGGCAAAGGATTT
TGGTAAGGAACACGTGAGCTTNCATGGGCACATGCA
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