FC875397

Overview
NameFC875397
Unique NameFC875397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875397_ssr41 microsatellite FC875397_ssr41:41..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14136 contig Ccv1_Contig14136:20..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875397 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.331e-39
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:   92 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 391
            MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100          
BLAST of FC875397 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.331e-39
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:   92 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 391
            MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100          
BLAST of FC875397 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.862e-21
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:   92 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 391
            MSR PEV WAQR DKV++TV LPDAK+  V  EP+G+FSFSA  GA+   +E  LEL+ K+  E  K NVG+R+I   ++K E+ WW +LL+ + K   Y
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKIMTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98          
The following BLAST results are available for this feature:
BLAST of FC875397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ2.331e-3980.00Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI2.331e-3980.00Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH2.862e-2151.00Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC31403E02EF CTVClemen1 Citrus clementina cDNA clone C31403E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875397 ID=FC875397; Name=FC875397; organism=Citrus clementina; type=EST; length=674bp
TTGCTTTCTCGTTACTTGACAAAACCGCAGGCTGTCGCAACTCTCTCTCT
CGCTCTAGGGTTTTACTGTTTTCTTTCCATTTCGAGACAATATGAGCCGT
GTTCCTGAGGTGAAGTGGGCCCAGAGGCAAGATAAGGTATTTATAACCGT
GCAATTACCTGACGCAAAAAATGCCAAGGTAAATCTTGAGCCAGAGGGAG
TGTTCTCCTTCTCTGCCAGTGCTGGTGCTGAAAACCACCTTTATGAGCTC
AAGCTGGAGCTTTTTGATAAGGTCAACGTGGAGGAAAGCAAAATTAATGT
AGGTGTAAGGAGCATATTCTGCATCGTGGAGAAGGCAGAAAAAGGATGGT
GGAAGAAACTACTTCGTGGAGATGGCAAGACACCACATTATGTCAAAGTT
GATTGGGACAAATGGGTAGACGAAGACGAGGATAATGGTGCAGGTGACTT
GGATCTTGGGGGGATGGACTTTTCGAATTTTGGTGGCATGGGAGGTGATG
ATGGTATGGGTGGCTTTGAAGACAGTGATGATGAAGAAGTGTCAAAGCCG
CAACAAGAAGTTCGCAAGGCAGGAGATACTAATCAAGAAGAGGAAGGTGA
GGACAAGAGTGATGCTGGCATTACTGAAGGGAAAACAGAAGCTGCTCAAG
CACATAATATTGTGGTTGTTCCAA
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