FC875398

Overview
NameFC875398
Unique NameFC875398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875398_ssr600 microsatellite FC875398_ssr600:600..619. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875398_ssr676 microsatellite FC875398_ssr676:676..693. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875398_ssr694 microsatellite FC875398_ssr694:694..711. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875398_ssr599 microsatellite FC875398_ssr599:599..618. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875398_ssr693 microsatellite FC875398_ssr693:693..708. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC875398 vs. ExPASy Swiss-Prot
Match: PI3K2_SOYBN (Phosphatidylinositol 3-kinase, nodule isoform OS=Glycine max PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:  478 FHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAE 579
            FHVDFG+ILGRDPKPFPPPMKLCKEMVEAMGGAE
Sbjct:  684 FHVDFGFILGRDPKPFPPPMKLCKEMVEAMGGAE 717          
BLAST of FC875398 vs. ExPASy Swiss-Prot
Match: PI3K1_SOYBN (Phosphatidylinositol 3-kinase, root isoform OS=Glycine max PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:  478 FHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAE 579
            FHVDFG+ILGRDPKPFPPPMKLCKEMVEAMGGAE
Sbjct:  686 FHVDFGFILGRDPKPFPPPMKLCKEMVEAMGGAE 719          
BLAST of FC875398 vs. ExPASy Swiss-Prot
Match: PI3K_ARATH (Phosphatidylinositol 3-kinase VPS34 OS=Arabidopsis thaliana GN=At1g60490 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query:  478 FHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAE 579
            FHVDF +ILGRDPKPFPPPMKLCKEMVEAMGGAE
Sbjct:  686 FHVDFAFILGRDPKPFPPPMKLCKEMVEAMGGAE 719          
The following BLAST results are available for this feature:
BLAST of FC875398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PI3K2_SOYBN1.456e-1397.06Phosphatidylinositol 3-kinase, nodule isoform OS=G... [more]
PI3K1_SOYBN1.456e-1397.06Phosphatidylinositol 3-kinase, root isoform OS=Gly... [more]
PI3K_ARATH7.225e-1394.12Phosphatidylinositol 3-kinase VPS34 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC31403E03EF CTVClemen1 Citrus clementina cDNA clone C31403E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875398 ID=FC875398; Name=FC875398; organism=Citrus clementina; type=EST; length=721bp
ATTTGATTATTGAGGACAGAAGCATATCTGAACTTCATTCCTCTAGGCTA
TGGGTGACACTGAATGAATCAAATAAAAAACTTTCGTTAGTAGTTTCTGA
AATGTCTCCTTTTTCTTCTAAGCAAAATGTGTACATATGTGGTTGTTTAC
ATCTCTTTGTAACTAAACTTGCCTAATTTTAGGTATTTTAGTCAGTAGTA
TCTGTCAATTTAGCCTATACTATGCACAATGTTGCGATTCATGGATGTCA
AATGTTGTGTCTAAGCTCTTATGTCCCCAGACTGTCACATTCTTATTTGA
GGGATTAGTATCTGCTTCATGTCACATTCCCATTTTAGGGATGATTTTCT
GCTTTATGTGGTGTCTGGTTTTCTAATTCCCTATTGCATAGGGCTTTCTC
TGAATTTTTCAAGCTGAACTGAATTTCTGAAAGGCAGGCACCTAGACAAC
CTTCTTCTTAGGGATGATGGGCGTCTTTTCCATGTGGATTTTGGTTATAT
TCTTGGGCGAGATCCCAAGCCATTTCCCCCTCCAATGAAGCTGTGCAAAG
AAATGGTTGAGGCTATGGGAGGAGCGGAAAGGTTTCCCCCCCCCCCCCCT
CTCTCTCTCTCTCTCTCTCTGTGTCTAAAAATAACTTCTCTTTTAGTCCT
TTTTTCTGGATATACTTCTATGTGCGTGTGTGTGTGTGTGTGTCTCTCTC
TCTCTCTCTCTTGCGCGCGCG
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