FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:7..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.527e-85
Identity = 138/157 (87.90%), Postives = 154/157 (98.09%), Query Frame = 3
Query:  111 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            MALAFDEFGRPFI+LR+Q++K+RLRG+DAQKAN++AGKAVARILR+SLGPKGMDKMLQ PDGD+TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAG+LLEQAE+ L+RGIHPIRIAEGYEMASR+AVEHLERIAQKFEF +N+
Sbjct:    1 MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNN 157          

HSP 2 Score: 55.4546 bits (132), Expect = 5.527e-85
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            TCMTTL+SK+VNR +R LAE   +AVLAVADLER+  +LDL
Sbjct:  164 TCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDL 204          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 9.417e-82
Identity = 136/157 (86.62%), Postives = 149/157 (94.90%), Query Frame = 3
Query:  111 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            MAL FDE+ RPFI+LR+QE+KSRL+GLDAQKAN++AGK+VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKLMVELSRSQDY+IGDGTTGVVVMAGSLLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D
Sbjct:    1 MALDFDEYWRPFIILREQEKKSRLQGLDAQKANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATD 157          

HSP 2 Score: 54.6842 bits (130), Expect = 9.417e-82
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            TCMTTL+SK+V+R +R LAE   +AVLAVADLERK  +LDL
Sbjct:  164 TCMTTLSSKIVSRCKRALAEIAVKAVLAVADLERKDVNLDL 204          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.602e-81
Identity = 134/157 (85.35%), Postives = 149/157 (94.90%), Query Frame = 3
Query:  111 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            MALAFDE+GRPFI+LR+QE+KSRL+GLDA KAN++A KA+ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKL+VELSRSQDY+IGDGTTGVVVMAG+LLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D
Sbjct:    1 MALAFDEYGRPFIILREQEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATD 157          

HSP 2 Score: 54.299 bits (129), Expect = 1.602e-81
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            TCMTTL+SK+V+R +R LAE   +AVLAVADLERK  +LDL
Sbjct:  164 TCMTTLSSKIVSRCKRALAEISVKAVLAVADLERKDVNLDL 204          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.097e-61
Identity = 105/155 (67.74%), Postives = 134/155 (86.45%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVTITNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+ K    +N+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINN 161          

HSP 2 Score: 39.6614 bits (91), Expect = 1.097e-61
Identity = 19/41 (46.34%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T  TTL SK++N   R++AE    AVL VAD+ER+    +L
Sbjct:  168 TAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDVDFEL 208          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.170e-61
Identity = 103/155 (66.45%), Postives = 132/155 (85.16%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKD 161          

HSP 2 Score: 40.0466 bits (92), Expect = 3.170e-61
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T  TTL SK+VN   R++AE    AVL VAD+ER+    +L
Sbjct:  168 TAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFEL 208          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.170e-61
Identity = 103/155 (66.45%), Postives = 132/155 (85.16%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKD 161          

HSP 2 Score: 40.0466 bits (92), Expect = 3.170e-61
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T  TTL SK+VN   R++AE    AVL VAD+ER+    +L
Sbjct:  168 TAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFEL 208          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.170e-61
Identity = 103/155 (66.45%), Postives = 132/155 (85.16%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKD 161          

HSP 2 Score: 40.0466 bits (92), Expect = 3.170e-61
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T  TTL SK+VN   R++AE    AVL VAD+ER+    +L
Sbjct:  168 TAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFEL 208          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.133e-61
Identity = 103/155 (66.45%), Postives = 133/155 (85.81%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND 581
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+      +N+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINN 161          

HSP 2 Score: 40.0466 bits (92), Expect = 4.133e-61
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T  TTL SK+VN   R++AE    AVL VAD+ER+    +L
Sbjct:  168 TAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFEL 208          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.558e-60
Identity = 100/153 (65.36%), Postives = 128/153 (83.66%), Query Frame = 3
Query:  111 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF 569
            M+L FDE+G PFI++R Q+ K RLRG++A ++++ A K ++ I+++SLGPKGMDKM+ S DG+V +TNDGATILE M VDNQIAKLMV+LS+SQD EIGDGTTGVVV+AGSLLEQAE+L+E+GIHP RI EGYE A +IA EHL+ I+   EF
Sbjct:    1 MSLVFDEYGNPFIVIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEF 153          

HSP 2 Score: 43.8986 bits (102), Expect = 1.558e-60
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLD 718
            T MT L SK+VNR  R+++E   +AV++VADLERK  +L+
Sbjct:  164 TAMTCLGSKIVNRFHRQMSEIAVKAVISVADLERKDVNLE 203          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.541e-57
Identity = 97/149 (65.10%), Postives = 131/149 (87.92%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKF 563
            L FDE G+PFI++R+QE + R+ G++A K+++ A +AVA  LRTSLGP+G+DKML SPDGDVTITNDGATI+E+MDV + +AKLMVELS+SQD+EIGDGTTGVVV+AG+LLE+AEKL++RGIHPI+IA+G+++A + A+E L+ I+ KF
Sbjct:    8 LLFDESGQPFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKF 156          

HSP 2 Score: 38.891 bits (89), Expect = 1.541e-57
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 2
Query:  599 TCMTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T  T+L SK+VNR  R+ AE    AVL+VAD+E K  + ++
Sbjct:  167 TAQTSLGSKIVNRSLRQFAEIAVDAVLSVADIESKDVNFEM 207          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPE_ARATH5.527e-8587.90T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA9.417e-8286.62T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA1.602e-8185.35T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MOUSE1.097e-6167.74T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_PONAB3.170e-6166.45T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA3.170e-6166.45T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN3.170e-6166.45T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_RAT4.133e-6166.45T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_DICDI1.558e-6065.36T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_CAEEL1.541e-5765.10T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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