FC875401

Overview
NameFC875401
Unique NameFC875401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10172 contig Ccv1_Contig10172:35..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.087e-97
Identity = 166/187 (88.77%), Postives = 179/187 (95.72%), Query Frame = 1
Query:  154 DLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            DLAS +GGKIDK++VL+AVEKYE+YHV +GG EEERKANYTDMVNKYYDL TSFYE+GWGESFHFA RWKGESL+ESIKRHEHFLALQLG++ GQKVLDVGCGIGGPLREIARFS++ VTGLNNNEYQITRGKELNR AGVDKTCNFVKADFMKMPFP+NSFDAVYAIEATCHAPDAYGCYKEIYRV
Sbjct:    2 DLASNLGGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRV 188          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.548e-92
Identity = 161/194 (82.99%), Postives = 174/194 (89.69%), Query Frame = 1
Query:  133 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            MS++GA DLASG+GGKI K EV SAV++YEKYH  YGG+EE RK+NYTDMVNKYYDL TSFYE+GWGESFHFA RW GESL+ESIKRHEHFLALQLG+K G KVLDVGCGIGGPLREIA+FS  SVTGLNNNEYQITRGKELNR AGV  TC+FVKADFMKMPF DN+FDAVYAIEATCHAPD  GCYKEIYRV
Sbjct:    1 MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRV 194          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.976e-55
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = 1
Query:  253 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            + RK NYT MVN +YDL T FYEFGWG+SFHFA R K ES + SI RHE ++A QLGL  G KV+D+GCG+GGP+R IARFS  +V GLNNNEYQI RGK LN  AG+   C+F+KADFM +P  DN++D  Y IEATCHAPD  G YKE++R+
Sbjct:   52 QARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRI 205          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_YARLI (Sterol 24-C-methyltransferase OS=Yarrowia lipolytica GN=ERG6 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.157e-49
Identity = 86/156 (55.13%), Postives = 113/156 (72.44%), Query Frame = 1
Query:  247 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            +E+ R  +Y  +   YY+LVT FYE+GWG SFHF+  +KGE+ +++  RHEH+LA ++G++ G KVLDVGCG+GGP REIARF+  ++ GLNNN+YQ+ RG   +   G      +VK DFM+M FPDNSFDAVYAIEAT HAP   G Y EI+RV
Sbjct:   67 DEQGRIEDYAGLTKHYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHYLAYKMGIQPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMDFPDNSFDAVYAIEATVHAPVLEGVYSEIFRV 222          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_ASHGO (Sterol 24-C-methyltransferase OS=Ashbya gossypii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.050e-48
Identity = 90/155 (58.06%), Postives = 111/155 (71.61%), Query Frame = 1
Query:  250 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            EE R A+Y +  + YY++VT FYE+GWG SFHF+  + GES   S+ RHEH+LA + G+ SG  VLDVGCG+GGP REIARF+   V GLNNN+YQI +GK  +R  G+    ++VK DFM M FPD +FD VYAIEATCHAP   G Y EIYRV
Sbjct:   60 EERRLADYNESTHSYYNVVTDFYEYGWGASFHFSRFYTGESFAMSMARHEHYLAHRAGITSGDLVLDVGCGVGGPAREIARFTGCRVVGLNNNDYQIMKGKHYSRKLGLGDQVSYVKGDFMNMDFPDATFDKVYAIEATCHAPSFEGVYGEIYRV 214          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 189.504 bits (480), Expect = 1.516e-47
Identity = 87/155 (56.13%), Postives = 110/155 (70.97%), Query Frame = 1
Query:  250 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            EE R  +Y +  + YY++VT FYE+GWG SFHF+  +KGES   SI RHEH+LA + G++ G  VLDVGCG+GGP REIARF+  +V GLNNN+YQI + K   +   +    +FVK DFMKM F +N+FD VYAIEATCHAP   G Y EIY+V
Sbjct:   59 EERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKV 213          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_NEUCR (Sterol 24-C-methyltransferase OS=Neurospora crassa GN=B24P7.240 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.190e-46
Identity = 87/156 (55.77%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  247 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            + E R   Y  +   YY+L T  YE+GWG+ FHF     GES  ++I RHEH+LA Q+G+K   KVLDVGCG+GGP REIA+F+   +TGLNNN+YQI R        G+     FVK DFM+M FPDNSFDAVYAIEAT HAP   G Y EIYRV
Sbjct:   67 DREARTKEYATLTRHYYNLATDIYEYGWGQCFHFCRYSPGESFYQAIARHEHYLAAQIGIKKDMKVLDVGCGVGGPAREIAKFTDAHITGLNNNDYQIDRATHYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYRV 222          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_SCHPO (Sterol 24-C-methyltransferase OS=Schizosaccharomyces pombe GN=SPBC16E9.05 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.860e-46
Identity = 90/172 (52.33%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  211 EKYEKYHVCYGGEEEERKAN----YTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            E +E +   +  E EE +A     Y  +VN YYDL T  YE+GW +SFHF+  +KGE+  +SI RHEH+LA ++G+K G +VLDVGCG+GGP REI  F+  ++ GLNNN+YQI+R         +DK   FVK DFM MPF DN+FD VYAIEAT HAP   G Y EI+RV
Sbjct:   47 EYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRV 218          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_KLULA (Sterol 24-C-methyltransferase OS=Kluyveromyces lactis GN=ERG6 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.087e-45
Identity = 87/179 (48.60%), Postives = 119/179 (66.48%), Query Frame = 1
Query:  184 DKTEVLSAVEKYEKYHVCYGGEEEERKA--NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            +K+    AV KY K+       + ER+   +Y +  + YY++VT FYE+GWG SFHF+  +KGES   S+ RHEH+LA + G+K    +LDVGCG+GGP R I+RF+  ++ GLNNN+YQI +     +   +D   +FVK DFMKM F +N+FD+VYAIEATCHAP   G Y EIY+V
Sbjct:   35 NKSAQTEAVAKYLKHWDGKTDADAERRRLEDYNESTHSYYNVVTDFYEYGWGSSFHFSRFFKGESFSASVARHEHYLAYKAGIKENDLILDVGCGVGGPARTISRFTGCNIIGLNNNDYQIQKANYYAKRDHLDSKLSFVKGDFMKMEFDENTFDSVYAIEATCHAPTFEGVYGEIYKV 213          
BLAST of FC875401 vs. ExPASy Swiss-Prot
Match: ERG6_DEBHA (Sterol 24-C-methyltransferase OS=Debaryomyces hansenii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.044e-45
Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 1
Query:  247 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRV 714
            +E++R ++Y+++   YY+LVT FYE+GWG SFHF+  + GE+ +++  RHEHFLA ++ +    KVLDVGCG+GGP REI RF+  S+ GLNNN+YQI R     R   +D   +FVK DFM+M F   SFDAVYAIEAT HAP   G Y EIY+V
Sbjct:   62 DEDKRLSDYSNLTAHYYNLVTDFYEYGWGSSFHFSRYYTGEAFRQATARHEHFLAHKMQINENMKVLDVGCGVGGPAREICRFTDCSIVGLNNNDYQIERANHYARKYKLDDKLSFVKGDFMQMDFEAESFDAVYAIEATVHAPVLEGVYSEIYKV 217          
The following BLAST results are available for this feature:
BLAST of FC875401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SMT1_ARATH2.087e-9788.77Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
SMT1_ORYSJ1.548e-9282.99Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_DICDI1.976e-5562.99Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]
ERG6_YARLI6.157e-4955.13Sterol 24-C-methyltransferase OS=Yarrowia lipolyti... [more]
ERG6_ASHGO1.050e-4858.06Sterol 24-C-methyltransferase OS=Ashbya gossypii G... [more]
ERG6_YEAST1.516e-4756.13Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_NEUCR2.190e-4655.77Sterol 24-C-methyltransferase OS=Neurospora crassa... [more]
ERG6_SCHPO2.860e-4652.33Sterol 24-C-methyltransferase OS=Schizosaccharomyc... [more]
ERG6_KLULA1.087e-4548.60Sterol 24-C-methyltransferase OS=Kluyveromyces lac... [more]
ERG6_DEBHA7.044e-4553.21Sterol 24-C-methyltransferase OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionC31403E06EF CTVClemen1 Citrus clementina cDNA clone C31403E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875401 ID=FC875401; Name=FC875401; organism=Citrus clementina; type=EST; length=714bp
GAAGCTGCCTGTACTCTACTCTGTAGATTCCAAAGCTCCTTCAGTCTTCA
CACACAACAGAAACACACCTTCTCTCTGTTCCGAATTCTCCTTCTCTTTT
TGCGGCTCTTTCAACGTCGGTATATTGCGAGAATGTCGAAGGCTGGAGCT
TTTGATTTGGCTTCTGGAGTGGGCGGAAAGATTGATAAAACCGAAGTGCT
CTCCGCCGTCGAAAAGTATGAGAAGTATCATGTCTGTTATGGAGGTGAAG
AGGAAGAGAGAAAAGCTAACTACACTGACATGGTTAATAAATATTATGAT
CTTGTTACCAGCTTTTATGAGTTTGGCTGGGGGGAGTCATTCCATTTTGC
ACCAAGATGGAAAGGAGAGTCTCTTCAGGAGAGTATCAAGCGACATGAGC
ACTTCCTTGCTTTGCAACTTGGCCTTAAATCTGGGCAGAAGGTTTTGGAT
GTTGGATGTGGAATTGGTGGACCCTTGAGAGAAATTGCTCGATTCAGCTC
AACATCAGTTACTGGGTTGAACAACAATGAGTATCAGATAACAAGAGGAA
AGGAATTAAACCGCTTTGCAGGAGTGGACAAGACCTGCAACTTTGTAAAG
GCTGACTTCATGAAAATGCCATTTCCTGACAATAGTTTTGATGCTGTGTA
TGCAATTGAAGCAACCTGTCATGCTCCAGATGCATATGGATGCTACAAAG
AGATTTACAGAGTA
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