FC875404

Overview
NameFC875404
Unique NameFC875404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 1.693e-99
Identity = 170/212 (80.19%), Postives = 188/212 (88.68%), Query Frame = 3
Query:   75 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALL 710
            M K+YPTVS DY+KA+EK KRKLRGFIAEK C PL+LR+AWHSAGT+D KTKTGGPFGT++  AE AH ANNGLDIAVRLLEP KEQFP +SYAD YQLAGVV VE+TGGP++PFHPGR+DK EPP EGRLPDA +G+DHLR VFG  MGLSD+DIVALSGGHT+G  HKERSGFEGPWT +PLIFDNSYFTELLTGEKDGLL LPSDKALL
Sbjct:    1 MGKSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALL 212          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 6.435e-99
Identity = 168/213 (78.87%), Postives = 190/213 (89.20%), Query Frame = 3
Query:   75 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALLD 713
            MTKNYPTVSEDYKKAVEKC+RKLRG IAEKNC P+M+R+AWHSAGT+D +++TGGPFGTMR  AEQAH AN+G+ IA+RLL+P +EQFPTIS+AD +QLAGVV VEVTGGPDIPFHPGR+DK +PP EGRLPDA +G DHLR VF  QMGLSDKDIVALSG HTLGRCHK+RSGFEG WT +PLIFDNSYF ELL+GEK+GLL L SDKALLD
Sbjct:    1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLD 213          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.023e-97
Identity = 165/212 (77.83%), Postives = 189/212 (89.15%), Query Frame = 3
Query:   75 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALL 710
            M KNYP VS +Y++AVEK ++KLR  IAEK+C PLMLR+AWHSAGT+DV +KTGGPFGTM+  AE +H+AN GLDIAVR+LEP KE+ PTISYAD YQLAGVV VEV+GGP +PFHPGR+DK  PP EGRLPDA +G+DHLRQVFGAQMGLSD+DIVALSGGHTLGRCHKERSGFEGPWTR+PL FDNSYFTELL+G+K+GLL LPSDKALL
Sbjct:    1 MAKNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALL 212          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.023e-97
Identity = 165/212 (77.83%), Postives = 189/212 (89.15%), Query Frame = 3
Query:   75 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALL 710
            M KNYP VS +Y++AVEK ++KLR  IAEK+C PLMLR+AWHSAGT+DV +KTGGPFGTM+  AE +H+AN GLDIAVR+LEP KE+ PTISYAD YQLAGVV VEV+GGP +PFHPGR+DK  PP EGRLPDA +G+DHLRQVFGAQMGLSD+DIVALSGGHTLGRCHKERSGFEGPWTR+PL FDNSYFTELL+G+K+GLL LPSDKALL
Sbjct:    1 MAKNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALL 212          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.866e-97
Identity = 165/211 (78.20%), Postives = 187/211 (88.63%), Query Frame = 3
Query:   78 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALL 710
            +K+YPTVS++Y  AV K KRKLRG IAEKNC PLMLR+AWHSAGT+DV ++TGGPFGTM+   EQ+H+AN GLDIAVRLL+P K+Q P +SYAD YQLAGVV VEVTGGP++PFHPGR DK EPP EGRLPDA QG+DHLRQVF AQMGLSDKDIVALSGGHTLGRCHKERSGFEG WT +PLIFDNSYFTEL++GEK+GLL LPSDKAL+
Sbjct:    3 SKSYPTVSDEYLAAVGKAKRKLRGLIAEKNCAPLMLRLAWHSAGTFDVSSRTGGPFGTMKNPGEQSHAANAGLDIAVRLLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSAQMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALM 213          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 345.125 bits (884), Expect = 2.142e-94
Identity = 163/211 (77.25%), Postives = 185/211 (87.68%), Query Frame = 3
Query:   81 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALLD 713
            K+YP V E+YKKAV++CKRKLRG IAEK+C P++LR+AWHSAGT+DVKTKTGGPFGT+R   E AH ANNGLDIAVRLL+P KE FP +SYAD YQLAGVV VE+TGGP+IPFHPGR DK EPP EGRLP A +G DHLR VFG +MGL+DKDIVALSGGHTLGRCHKERSGFEG WT +PLIFDNSYF E+L+GEK+GLL LP+DKALLD
Sbjct:    4 KSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFG-RMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLD 213          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.216e-74
Identity = 137/208 (65.87%), Postives = 158/208 (75.96%), Query Frame = 3
Query:   90 PTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALLD 713
            P V  +Y K + K +R+LR  IA KNC P+MLR+AWH AGTYD ++KTGGP G++R   E  H AN+GL IA+ L E  K + P I+YADLYQLAGVV VEVTGGPDI F PGR D    P+EGRLPDAKQG  HLR VF  +MGLSDKDIVALSGGHTLGR H ERSGF+GPWT+ PL FDNSYF ELL GE +GLL LP+DK LL+
Sbjct:    4 PIVDAEYLKEITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQSKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKDSNVCPKEGRLPDAKQGFQHLRDVF-YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLLE 210          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.010e-72
Identity = 133/208 (63.94%), Postives = 157/208 (75.48%), Query Frame = 3
Query:   90 PTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALLD 713
            P V  +Y + V++ +R LR  I+ K C P+MLR+AWH AGTYDV TKTGG  G++R   E  H +N GL IA+ LLEP K + P I+YADLYQLAGVV VEVTGGP + F PGR D +  P+EGRLPDAK+G  HLR +F  +MGLSDKDIVALSGGHTLGR H ERSGFEG WT+ PL FDNSYF ELL GE +GLL LP+DKALL+
Sbjct:    4 PVVDAEYLRQVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREGRLPDAKKGALHLRDIF-YRMGLSDKDIVALSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLE 210          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.494e-71
Identity = 130/208 (62.50%), Postives = 159/208 (76.44%), Query Frame = 3
Query:   90 PTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALLD 713
            P V  +Y   VE+ +R LR  IA K+C P+MLR+AWH AGTYD  TKTGGP G++R   E +H+AN G+ IA+ LLEP K++ P I+YADLYQLAGVV VEVTGGP I + PGR D ++ P+EGRLPDAK+G  HLR+VF  +MGLSDKDIVALSGGHTLG+   ERSGF+G WT+ PL FDNSYF ELL    +GLL LP+DKAL++
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVF-YRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVE 211          
BLAST of FC875404 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.494e-71
Identity = 130/208 (62.50%), Postives = 159/208 (76.44%), Query Frame = 3
Query:   90 PTVSEDYKKAVEKCKRKLRGFIAEKNCTPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRHPLIFDNSYFTELLTGEKDGLLXLPSDKALLD 713
            P V  +Y   VE+ +R LR  IA K+C P+MLR+AWH AGTYD  TKTGGP G++R   E +H+AN G+ IA+ LLEP K++ P I+YADLYQLAGVV VEVTGGP I + PGR D ++ P+EGRLPDAK+G  HLR+VF  +MGLSDKDIVALSGGHTLG+   ERSGF+G WT+ PL FDNSYF ELL    +GLL LP+DKAL++
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVF-YRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVE 211          
The following BLAST results are available for this feature:
BLAST of FC875404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
APX1_PEA1.693e-9980.19L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX1_ARATH6.435e-9978.87L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX1_ORYSJ6.023e-9777.83L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI6.023e-9777.83L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX2_ORYSJ7.866e-9778.20L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX2_ARATH2.142e-9477.25L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX3_ARATH3.216e-7465.87L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]
APX4_ORYSJ3.010e-7263.94Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ORYSJ1.494e-7162.50Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI1.494e-7162.50Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC31403E09EF CTVClemen1 Citrus clementina cDNA clone C31403E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875404 ID=FC875404; Name=FC875404; organism=Citrus clementina; type=EST; length=713bp
GGTGCTCTGCTCGTGCCACTCTCGTTTGTTAAGGATTTGCGTCTCTCTTT
CTCATTTCATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAG
CGAGGATTACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCT
TCATCGCTGAGAAGAACTGCACTCCACTCATGCTCCGTATCGCGTGGCAC
TCAGCTGGTACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAAC
CATGAGGCTCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATA
TTGCCGTTAGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCC
TACGCTGACCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGG
TGGGCCCGATATCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCAC
CTCAAGAAGGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGG
CAAGTCTTTGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCT
CTCTGGTGGCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTG
AGGGACCATGGACCCGNCACCCTCTCATTTTTGACAATTCCTACTTCACG
GAGCTCTTGACTGGTGAGAAGGATGGTCTTCTGNCATTGCCATCCGACAA
GGCCCTTCTGGAT
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