FC875409

Overview
NameFC875409
Unique NameFC875409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC875409 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.250e-17
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 3 
Query:  192 MGIGEEENPLLL-----SSIYENETPPHLQEISNDDSLVSKTWK------ESKKLWQIAGPSIFSRPAMFSMTVVTQAFAGHLGDLNLXXXXXXXXXXXXXXFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIV 575
            M   E   PLL      S I E  +P   + +    S V+  W       ESK LW ++G SI      + ++ VT  F GHLG L L              +G +LGMASA++T+CGQAYGA+QY  +GI  QR+ ++
Sbjct:    1 MSSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVL 139

HSP 2 Score: 27.7202 bits (60), Expect = 5.250e-17
Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = 2 
Query:  614 FASPLLKLIGQPTSVAEQTGIFAVWLIP 697
            ++ P+LK +GQ  ++A +  IFA  +IP
Sbjct:  153 YSGPILKTMGQSVAIAHEGQIFARGMIP 180
The following BLAST results are available for this feature:
BLAST of FC875409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH5.250e-1735.97Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC31403F03EF CTVClemen1 Citrus clementina cDNA clone C31403F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875409 ID=FC875409; Name=FC875409; organism=Citrus clementina; type=EST; length=719bp
GGACGCCAGCCCCACAATTCAGGGGTCAGCGGCGGCGGAGAATCTTTATT
AACTATTATGTATAAAATTACAATAGGCACAACAATGCAGTGAATCAGTG
ATCAGTTGAGTTGATGTCGACGTCCTAGAAATAGCAACAACAAAAAATTG
ATTTCCCCCGATCTTTACATCATATCAGCCATAAGCGAGTTATGGGCATC
GGAGAAGAAGAGAACCCTCTCTTACTCTCAAGCATTTATGAAAACGAAAC
ACCACCTCACCTCCAAGAAATATCAAACGATGATTCACTGGTTAGTAAAA
CATGGAAAGAATCAAAGAAATTATGGCAAATTGCAGGTCCCTCCATCTTC
AGTCGCCCTGCTATGTTCTCTATGACTGTCGTTACTCAGGCATTCGCTGG
CCATCTCGGTGACCTCAATCTTGCTGCCACCTCCATTGCCACCACTGTCA
TTATTTCCATCAGCTTTGGCTTCTTGTTAGGCATGGCTAGTGCGCTAGAA
ACATTATGTGGCCAAGCCTACGGGGCAAAGCAGTACCACATGCTAGGCAT
TTACATGCAAAGATCGTGGATTGTTTTGTTCATATGTTCATTTCTGTTGA
TACCCATGTTTGTTTTGCATCTCCTTTATTGAAGCTCATTGGACAGCCAA
CATCAGTGGCAGAGCAGACTGGTATTTTTGCTGTATGGCTGATACCATTT
CACTTGTGNTTACCATTTC
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