FC875415

Overview
NameFC875415
Unique NameFC875415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10225 contig Ccv1_Contig10225:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.027e-64
Identity = 121/170 (71.18%), Postives = 144/170 (84.71%), Query Frame = 1
Query:  124 NMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPLF 633
            +M  EE++RLKYL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P+E+LK++D+KVD SVT LD RVPPV+KQV AQA+SAAQ AP+VAR++ASEV+ AGV  TASGMAKSVY+KYEPAAKELY+ YEP AEQ AVSAW+KLNQ+PLF
Sbjct:   13 DMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLF 182          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.415e-54
Identity = 101/165 (61.21%), Postives = 131/165 (79.39%), Query Frame = 1
Query:  139 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPLF 633
            EE+RLKYL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +P ELL F+DRKV+ S+  L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLF 180          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.388e-46
Identity = 95/180 (52.78%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  100 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPL 630
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV  LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPL 183          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.388e-46
Identity = 95/180 (52.78%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  100 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPL 630
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV  LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPL 183          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 82/164 (50.00%), Postives = 102/164 (62.20%), Query Frame = 1
Query:  139 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPL 630
            EE+RLKYL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P+E +KF+D+ VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV               +  AK LY+  EP AEQYAV  WR LN++PL
Sbjct:    6 EEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV---------------QEGAKALYANLEPKAEQYAVITWRALNKLPL 150          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 72/166 (43.37%), Postives = 103/166 (62.05%), Query Frame = 1
Query:  136 EEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPLF 633
            ++E +LK+LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +P +LL F+DRKVD+    ++  VP ++KQ  +QAL           +VA+EV+  GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF
Sbjct:   36 DDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLF 179          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 75/155 (48.39%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  211 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYC 675
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P+ELLK+ DRKV E    LD  VP  +K+V +Q           ARSV SEV+  GV+                 AK +YSKYEP AEQ AVSAWRKLNQ+PLF            YC
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVS---------------TFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYC 130          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   91 MAEEKNVPSQQNMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEV 477
            MAE+++  +QQ     + + LKYL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA + AP  ARS+AS +
Sbjct:    1 MAEDED--NQQG----QGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLASSL 123          
BLAST of FC875415 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 63/161 (39.13%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  139 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTRLDCRVPPVLKQVPAQALSAAQTAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPXAEQYAVSAWRKLNQ 621
            +E  LK+L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   + D   PP+ K+V  QA      A   A+S   E +T G     +  A               ++Y+      +V  W KLNQ
Sbjct:    9 KEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAA---------------TEYKFFVVTNSVKVWAKLNQ 154          
The following BLAST results are available for this feature:
BLAST of FC875415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH8.027e-6471.18REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI4.415e-5461.21Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ3.388e-4652.78REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI3.388e-4652.78REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR2.278e-3450.00Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH6.203e-3243.37REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRP_PHAVU1.430e-2848.39Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
REF_HEVBR9.926e-2244.19Rubber elongation factor protein OS=Hevea brasilie... [more]
Y1736_ARATH2.888e-2139.13REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31403F09EF CTVClemen1 Citrus clementina cDNA clone C31403F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875415 ID=FC875415; Name=FC875415; organism=Citrus clementina; type=EST; length=677bp
GCCATTAAAATCCTTCATCGATTTCCTCGAACAAGTTAAAAGGCTTCTTT
TACGACGTCGTTTCACAGTCATTCGTCAATCATCATCACCATGGCCGAAG
AGAAGAACGTGCCGTCCCAACAAAACATGGATATTGAGGAGGAGCAGAGG
CTGAAATATTTGGAGTTTGTGCAAGTTGCCACAATCCATGTGTTGCTGTG
CTTCCATAATCTATATGGTTATGCTAAAGCCAAGTCCGGACCATTGAAAC
CTGGTGTGGAGTCCGTTGAGGGGACAGTCAAGAATGTGGTTGGACCTGTT
TATGATAAGTATCATGGTCTCCCGATTGAGCTCCTTAAGTTTATTGATCG
CAAGGTGGATGAGTCTGTGACCAGGCTGGACTGCCGTGTGCCTCCAGTCC
TCAAGCAAGTCCCTGCCCAAGCTCTCTCCGCGGCTCAAACGGCTCCAGTA
GTGGCACGATCCGTGGCTTCTGAAGTGAAGACTGCCGGTGTAGCCGGCAC
CGCCTCAGGAATGGCAAAATCCGTTTACACCAAGTACGAGCCCGCAGCCA
AGGAACTTTACTCCAAGTACGAACCANAAGCGGAGCAATATGCTGTGTCA
GCTTGGCGCAAGCTCAATCAGATGCCACTATTCCCTCAAGTAGCTCAAGT
TGTTGTGCCAACTGCTGCCTATTGTTC
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