FC875418

Overview
NameFC875418
Unique NameFC875418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10263 contig Ccv1_Contig10263:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSMRDAIEGM+GQ LDGRNITVNEAQ
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGM+GQ+LDGR+ITVNEAQ
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGM+GQ+LDGR+ITVNEAQ
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEK+M+DAIEGM+GQ+LDGR+ITVNEAQ
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSM+DAI+ M+G+ LDGR ITVNEAQ
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +IINDRE+GRSRGFGFVTF+DEK+MRDAIE M+G+ LDGR ITVNEAQ
Sbjct:   36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +II DRETGRSRGFGFVTF  +++MR AIE M+GQ+LDGRNITVNEAQ
Sbjct:   36 KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            ++I DRETGRSRGFGFVTF  E+SM DAIE M+G+ LDGRNITVN+AQ
Sbjct:   38 KVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            ++I DRETGRSRGFGFVTF  E SM DAIE M+G+ LDGRNITVN+AQ
Sbjct:   38 KVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC875418 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMDGQNLDGRNITVNEAQ 599
            +II DRET RSRGFGFVTF  E++MR AIEGM+G+ LDGRNITVNEAQ
Sbjct:   17 KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of FC875418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GRP1_DAUCA1.846e-1891.67Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL1.197e-1787.50Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SINAL1.197e-1787.50Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH2.666e-1785.42Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP10_BRANA1.120e-1581.25Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH3.259e-1581.25Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP_HORVU2.758e-1477.08Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SORBI8.026e-1475.00Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRPA_MAIZE1.048e-1375.00Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_SORBI2.335e-1377.08Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC31403F12EF CTVClemen1 Citrus clementina cDNA clone C31403F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875418 ID=FC875418; Name=FC875418; organism=Citrus clementina; type=EST; length=695bp
GGAATCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTA
GTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCG
GTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATG
AGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGGTCCGTTTGAAC
CAGATCCGACCCGATCCACGATTCGGCTTGTTCTGATCTGTGATTCGTGT
GCTCTGTGATCTGTTTCTGTTACTCTGTTACTGTTCTCTGTTACTACTGT
TACTCTATTATTACTATGCCTAAATCGGTACGTTCATCTTCATCTTTTTA
TTAAGACGAAGGGCCCGATCGGATTTATTATTATTTTTATTGTTATTAAG
TTTCCAGATCTGAGATGAATTTGCTAAATTATTTTTTTGTTTATCCTCGT
TAATTCAGATTATTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGA
TTCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCAT
GGACGGCCAGAATCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGT
CCCGTGGAAGCGGTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGT
GGTGGATATGGAGGTGGTGGACGCCNGTGAAGTGGTGGTGGCGGT
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