FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10226 contig Ccv1_Contig10226:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 95/142 (66.90%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  108 IVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 533
            + +PEE++K+F+QFD N DGKIS+ EL  V K+MG+SY E EL RV+E++DTDRDG+I+L EF T+CR+SS AA   E+R+AFDLYDQDKNGLISA EL+ VLNRLG+ CSV+ C  MI PVDADGDGNVNFEEF+ MMT+S
Sbjct:   18 MANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFSTLCRSSSSAA---EIRDAFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMMTSS 156          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 91/154 (59.09%), Postives = 117/154 (75.97%), Query Frame = 3
Query:   72 ATTEADSNRKQLIVSPE-EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 530
            A T  +S  K    S + E++K+F++FD N DGKIS++EL  V KSMG+SY EEEL RV++++D D DGFI+  EF TICR+SS A    E+REAFDLYDQ+KNGLIS+ E++ VLNRLG+ CSV+ CV MI  VD DGDGNVNFEEF+ MM++
Sbjct:    2 ANTNLESTNKSTTPSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFATICRSSSSAV---EIREAFDLYDQNKNGLISSSEIHKVLNRLGMTCSVEDCVRMIGHVDTDGDGNVNFEEFQKMMSS 152          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 3
Query:   66 MAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSS----GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            MAA T+ +S     +  P E+Q +FN+FD N DGKIS  ELA VLK++GS+  +EE+ R+ME++DTD+DGFI++ EF    +  +     + GE EL+EAF+LYDQD NGLIS+ EL+ +L RLG + +   CV MIK VD+DGDG V+FEEF+ MMT
Sbjct:    1 MAANTDRNSKPSVYLQEPNEVQGVFNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDGFINVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLGERYAEHDCVEMIKSVDSDGDGYVSFEEFKKMMT 158          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.456e-32
Identity = 74/147 (50.34%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSG------------AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E++++F ++D N DGKIS  ELA+VL+++G+     E+ R+M+++D+DRDGF+ LSEF    C  +              AA EAELREAF +YD D NG ISA EL+ VL +LG KCSV  C  MI+ VDADGDG VNF+EF+ MM
Sbjct:    5 ELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDKCSVADCSRMIRSVDADGDGCVNFDEFKKMM 151          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 65/140 (46.43%), Postives = 95/140 (67.86%), Query Frame = 3
Query:  114 SPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEA---ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            S E+++K+F +FD+N DGKIS+ EL  V+ ++  +  +EE   +M++ D D +GFI L EF  + + S  ++  +   +L+EAFDLYD D+NG ISA EL+ V+  LG KCS+  C  MI  VD+DGDG V+FEEF+ MM
Sbjct:   12 SMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30
Identity = 66/143 (46.15%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  114 SPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGE-----AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            S ++++K+F +FD+N DGKIS+ EL  V++++  +   EE V +M+  D D +GFI L EF  + +   G  G      ++L+EAF+LYD D NG ISA+EL+ V+  LG KCSV  C  MI  VD DGDG VNF+EF+ MM+
Sbjct:   14 SMDDIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLDEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDCKKMISKVDIDGDGCVNFDEFKKMMS 156          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSG--AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            EEM+++F +FD N DG+IS +EL  + +S+G +  ++EL R+M + D D DGFISL EF  +  T+SG  AA E +LR AF ++D D NG ISA EL  VL+ LG K +V  C  MI+ VD +GDG ++FEEF+ MM
Sbjct:   39 EEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 3
Query:   66 MAATTEADSNRKQLIVSPE-------EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEE----ELVRVMEDLDTDRDGFISLSEFETICRTSSG-AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            M+ TTE    ++Q +  P        E++++F +FD + DG+IS +ELA V +++     E     E+  +M +LDTDRDGF+ L EF        G A  EAELR AFD+YD D +G I+A EL  VL R+G  CS + C  MI  VD DGDG V FEEF+ MM
Sbjct:    1 MSNTTEKKMPQQQQVERPTALAPADAEIERVFTRFDADGDGRISPSELAAVTRAIAPPPSESAGGREVAAMMNELDTDRDGFVDLGEFAAFHGRGRGDAEHEAELRAAFDVYDVDGDGRITAAELGKVLGRIGEGCSAEECERMIASVDVDGDGCVGFEEFKKMM 165          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSG--AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            +E +++F +FD N DG+IS  ELA + +S+G +  ++E+ R+M++ D+D DG+ISL EF  I     G  AA E +LR AF ++D D NG+I+  EL  VL  +G   +V  C  MI  VD +GDG +NFEEF+ MM
Sbjct:   54 DETERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYISLGEFAAISAPPPGDAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIGEAATVAQCRRMIDGVDRNGDGLINFEEFKLMM 190          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAE-LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E++ +F +FD N DGKIS  EL  ++ S+G    EEEL + + ++D   DG+I+  EF  +           E L++AF +YD D NG ISAEEL+ VL  LG +CS+  C  MI  VD DGDG ++FEEF+ MMT
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMMT 172          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CML27_ARATH1.311e-4966.90Probable calcium-binding protein CML27 OS=Arabidop... [more]
CML26_ARATH2.165e-4459.09Probable calcium-binding protein CML26 OS=Arabidop... [more]
ALL8_OLEEU3.577e-3951.90Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]
CML18_ORYSJ1.456e-3250.34Probable calcium-binding protein CML18 OS=Oryza sa... [more]
CML23_ARATH3.964e-3046.43Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML24_ARATH6.762e-3046.15Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CML10_ORYSJ1.968e-2949.64Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CML16_ORYSJ1.080e-2743.64Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CML15_ORYSJ2.036e-2644.53Probable calcium-binding protein CML15 OS=Oryza sa... [more]
CML25_ARATH2.940e-2544.85Probable calcium-binding protein CML25 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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