FC875422

Overview
NameFC875422
Unique NameFC875422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15338 contig Ccv1_Contig15338:125..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.119e-72
Identity = 138/204 (67.65%), Postives = 155/204 (75.98%), Query Frame = 2
Query:    8 GFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVI-----VKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKP 604
            G GCM +S  Y  P  E D I +I HA N GIT  DT+D YGP+TNEILLGKALK   RE + +ATKFG   LG +        V G+P YVR+ CEASLKRLD++ IDLYYQHRVDT VPIE T+GE+KKLVEEGK+KYIGLSEAS  TIRRAHAVHPITAVQLEWSLW+RD+E EI+P CRELGIGIV YSPLGRGF    P
Sbjct:   24 GLGCMGMSAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIV-LGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSSGP 226          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.975e-69
Identity = 130/197 (65.99%), Postives = 153/197 (77.66%), Query Frame = 2
Query:    8 GFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFG--FAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFF 592
            G GCM +S  Y  P  E + I +I HA + G+TF DT+D YGP+TNE+LLGKAL+   RE +++ATKFG  FA+   +   + G+P YVR+ CE S KRL V+ IDLYYQHR+D  VPIE TIGE+KKLVEEGKIKYIGLSEAS  TIRRAHAVHPITAVQLEWSLW+RD E +I+P CRELGIGIV YSPLGRGFF
Sbjct:   24 GLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGVSFADGKRE---IHGDPAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCRELGIGIVAYSPLGRGFF 217          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.516e-40
Identity = 93/203 (45.81%), Postives = 129/203 (63.55%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPR-ENIQVATKFGFAELGLDAVIVKGN-PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENE---IVPLCRELGIGIVPYSPLGRGFFGG 598
            +GFGCM L   Y  P SEE   +++ HA + G TF+D++D YG   NE  +G+  K   R + I +ATKFG+ +      +   N P+Y+    + SLKRL ++ IDLYY HR     PIE+ +G +KK VE GKI+YIGLSE S +TIRRA AV+P++AVQ+E+S ++ +IE     ++  CRE  I IV Y+PLGRGF  G
Sbjct:   16 IGFGCMGLHAMYG-PSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTGRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGFLTG 217          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: PLR1_SCHPO (Pyridoxal reductase OS=Schizosaccharomyces pombe GN=plr1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 78/206 (37.86%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYG---PYTNEILLGKALKMLPRENIQVATKFGFAELGLD--AVIVKGNPEYVRSCCEASLKRL-DVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIE-NEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            +GFG M L+        +E+   ++ +A ++G  ++D  + YG   P +N  LL +  +  P    +V   F   + GLD   ++  GNP++V    E  +  L   + +DL+   RVD +VPIE T+  +K  V+ GKI  +GLSE S +TI+RAHAV PI AV++E+SL++RDIE N I+ +CR+L I I+ YSP  RG   G+
Sbjct:   12 IGFGLMGLTWKPKQ-TPDEEAFEVMNYALSQGSNYWDAGEFYGVDPPTSNLDLLARYFEKYPENANKV---FLSVKGGLDFKTLVPDGNPDFVSKSVENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTLKGFVDSGKISCVGLSEVSAETIKRAHAVVPIAAVEVEYSLFSRDIETNGIMDICRKLSIPIIAYSPFCRGLLTGR 213          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YCCK_BACSU (Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.427e-28
Identity = 75/212 (35.38%), Postives = 115/212 (54.25%), Query Frame = 2
Query:    2 KLGFGCMSLSGGYNSP-VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKPLWKCASDSF 631
            ++GFG  ++ G    P +++E G  +++ A + G+ F DTA  YG   +E L+G+ ++    R  + +ATK    E+   ++ +  + E++RS  E SLKRL  +YIDLYY H  D   P+ E  G +K+L +EGKIK IG S      ++  +A   +   Q E+SL  RD E E++P C + GI  +PY PL  G   GK       D F
Sbjct:   16 RIGFGANAVGGHNLFPNLNDETGKDLVRTALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATKGAHKEVD-GSIELDNSREFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLDYQQLQDFNADGYLEVFQAEYSLIQRDAEKELLPYCEKQGISFIPYFPLASGLLTGKFTQDTVFDDF 226          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YDJG_ECOLI (Uncharacterized oxidoreductase ydjG OS=Escherichia coli (strain K12) GN=ydjG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27
Identity = 74/213 (34.74%), Postives = 112/213 (52.58%), Query Frame = 2
Query:    2 KLGFGCMSLSGG--YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFG---------FAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGG 598
            ++G G  ++ GG  +N  +  +  I  I  A   GI   DTA  Y    +E+++G+ALK LPRE + V TK G         F ++G   +    +PE +R    ASL+RL ++YID+Y  H         PI ET+  + +L  EGKI+ IG +    D IR       +  +Q ++S+  R +ENE++PLCR+ GI +  YSPL +G   G
Sbjct:   15 RMGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTAPGYNFGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGKIRAIGAANVDADHIREYLQYGELDIIQAKYSILDRAMENELLPLCRDNGIVVQVYSPLEQGLLTG 227          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: IOLS_BACSU (Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.527e-26
Identity = 65/200 (32.50%), Postives = 110/200 (55.00%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSP-VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            +G G  ++ G    P ++EE G  +++ A   G+T  DTA  YG   +E L+G+ L+   RE++ +ATK    + G D V    +P++++   + SLKRL+ +YIDL+Y H  D   P +E +  + ++ + GKI+ IG+S  S + ++ A+    +  +Q E++L  R+ E    P  +E  I  +PY PL  G   GK
Sbjct:   16 IGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGEVLREFNREDVVIATKAAHRKQGNDFVF-DNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGK 214          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YH5B_SCHPO (Uncharacterized oxidoreductase C215.11c OS=Schizosaccharomyces pombe GN=SPBC215.11c PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26
Identity = 68/197 (34.52%), Postives = 111/197 (56.35%), Query Frame = 2
Query:    2 KLGFGCMSLSGG--YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRG 586
            ++GFG M ++G   ++ P  +E  I+ +K      I F DTAD YGP  +E LL +AL   P + + +ATK G    G +     G P+++R     S++RL V+ IDL+  HR+D  VP ++   E+  + +EG I+++GLSE + D I+ A    P+ +VQ  ++L  R  E +++  C + GI  +P+ PL  G
Sbjct:   27 RMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTADSYGPEVSENLLREAL--YPYKGLIIATKGGLVRTGPNEWHPCGAPKFLRQEVLMSMRRLGVKQIDLWQLHRIDPKVPRKDQFSEIAAMKKEGLIRHVGLSEVTVDDIKEAEQYFPVVSVQNLFNLVNRKNE-KVLEYCEQKGIAFIPWYPLASG 220          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.301e-24
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 2
Query:    2 KLGFGCMSLS----GGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALK-MLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRG 586
            +L  GCM+      G +   + EE    IIK A   GI FFDTA+ Y   ++E ++G+AL+    RE++ VATK  F  +G D        + +RS  + SL+RL ++Y+D+   HR D + PIEET+  +  +V+ GK +YIG S       A    +++ H      ++Q  ++L  R+ E E++PLC + G+ ++P+SPL RG
Sbjct:   15 RLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKV-FHRVG-DLPEGLSRAQILRSI-DDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARG 217          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.649e-23
Identity = 69/201 (34.33%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    2 KLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKML-PRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            ++G G  ++ G       E+  I  I+ A ++GIT  DTA  YG   +E ++GKA+K    R+ + +ATK    +   + +    N   +    E SLKRL  +YIDLY  H  D  VPIEET   MK+L + GKI+ IG+S  S + +    AV P+  +Q  ++L+ R++E  ++P  ++  I  + Y  L RG   GK
Sbjct:   15 RIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYGKRDQVILATKTAL-DWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLTGK 214          
The following BLAST results are available for this feature:
BLAST of FC875422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
A115_TOBAC1.119e-7267.65Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE1.975e-6965.99IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
YAKC_SCHPO2.516e-4045.81Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
PLR1_SCHPO3.768e-2837.86Pyridoxal reductase OS=Schizosaccharomyces pombe G... [more]
YCCK_BACSU6.427e-2835.38Uncharacterized oxidoreductase yccK OS=Bacillus su... [more]
YDJG_ECOLI5.441e-2734.74Uncharacterized oxidoreductase ydjG OS=Escherichia... [more]
IOLS_BACSU3.527e-2632.50Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=... [more]
YH5B_SCHPO7.856e-2634.52Uncharacterized oxidoreductase C215.11c OS=Schizos... [more]
YAJO_ECOLI3.301e-2434.95Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
GS69_BACSU3.649e-2334.33General stress protein 69 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31403G04EF CTVClemen1 Citrus clementina cDNA clone C31403G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875422 ID=FC875422; Name=FC875422; organism=Citrus clementina; type=EST; length=642bp
AAAGCTGGGATTTGGATGCATGAGCCTGAGTGGAGGTTACAATTCTCCAG
TCTCTGAAGAGGATGGCATCTCTATAATAAAGCATGCTTTCAATAAAGGA
ATCACTTTCTTTGATACTGCTGATAAATATGGACCATATACTAATGAAAT
TCTTCTTGGAAAGGCCTTGAAGATGTTGCCCAGAGAAAACATACAAGTAG
CCACAAAGTTTGGGTTTGCAGAATTGGGACTTGATGCTGTGATCGTGAAG
GGTAACCCTGAGTATGTGCGCTCATGTTGTGAAGCTAGCTTGAAGCGCCT
TGATGTGGAATACATTGATCTGTATTATCAACATAGAGTGGACACATCAG
TCCCCATAGAGGAAACTATTGGCGAAATGAAAAAGCTGGTGGAAGAGGGT
AAAATCAAGTACATAGGATTATCTGAGGCTAGCCCAGATACAATTAGGAG
AGCACATGCTGTTCATCCTATCACAGCTGTACAACTGGAATGGTCTCTTT
GGACTCGTGACATTGAGAACGAGATAGTACCACTTTGCAGGGAGCTTGGC
ATTGGAATAGTTCCATACAGTCCTCTTGGTCGTGGATTTTTCGGTGGCAA
GCCGTTGTGGAAGTGTGCCTCAGATAGCTTTTTGAATTTCTT
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