FC875423

Overview
NameFC875423
Unique NameFC875423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875423_ssr300 microsatellite FC875423_ssr300:300..317. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875423_ssr49 microsatellite FC875423_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875423_ssr81 microsatellite FC875423_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10227 contig Ccv1_Contig10227:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 3
Query:  105 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIG-VHFTLEGLEALVEKPSLCFDEFL-FFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 587
            +T NDL+R+F+ LD+N DGLV+L+EL W+L+++G    T + LE +V K SL  DEFL F+ D+++                                 + + F+VFDVNGDG+I++EEL+ VL RLG  +E  + DC  MI V+D N DG +DFEEFKNM+L
Sbjct:    6 ITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYDAVLDSKGSKKNIDVVADNDEA---------------IARAFNVFDVNGDGYISAEELRDVLERLGFEEEAKAWDCGRMIRVHDKNLDGFVDFEEFKNMIL 153          
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 54/156 (34.62%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  117 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEGLEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 584
            +L RIF+  DRNGDG ++ +ELN  LE +G++   + L  ++EK  L  D ++                                        + + F+VFD N DGFIT EEL+SVLA LGL   ++ +DC+ MI   D + DG+++F+EFK MM
Sbjct:    5 ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYV-------------------DIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  105 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEGLEALVEKPSL----CFD--EFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 584
            + + +L+++F+  D+NGDG ++ +EL    +  G+    + L+A ++K       C D  EF     SI+                                 + + F+VFD NGDGFIT +EL+SVL+ LGL   +++ DCR MI + D + DG +DF+EFK MM
Sbjct:    1 MDSTELRKVFKMFDKNGDGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEEFGLLYRSILGDDAAGRAPRTAAAAIGGEGGAPDDEDEG----MREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMM 162          
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = 3
Query:  117 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEGLEALVEKP------SLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 584
            +L R+F+  D+NGDG ++  EL    + +G+      +  ++ K       ++  DEF      ++                                 + + F VFD NGDGFIT EEL+SVLA +GL   ++ +DC+ MI   D + DG+++F+EFK MM
Sbjct:    5 ELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEED-------------------------MREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 50/156 (32.05%), Postives = 74/156 (47.44%), Query Frame = 3
Query:  117 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEGLEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 584
            +L+ +F+K D NGDG +S +EL  ++  +G     E LE  + +     D ++ F + +                                  L   FSV+D++G+G I++EEL  VL  LG  DE S  +CR MI   D + DG +DFEEFK MM
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFV-------------------ELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLG--DECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 49/162 (30.25%), Postives = 71/162 (43.83%), Query Frame = 3
Query:   99 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEGLEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 584
            AP    +++R+F K D NGDG +S  EL  + E +G   T + L  ++ +     D F+   +                                    L   F VFD +G+G I++ EL  VL  LG  ++ + Q CR MI   D N DG++ FEEFK MM
Sbjct:   34 APTPEEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDE------------------FAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLG--EKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of FC875423 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 42/157 (26.75%), Postives = 81/157 (51.59%), Query Frame = 3
Query:  117 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEGLEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKTFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 587
            D++++F++ D+N DG +S++EL  V+  +  + + E  +A++++  L  + F+   + +                                  L + F ++D++ +G I++ EL SV+  LG  ++ S QDC+ MI   D++ DG +DFEEFK MM+
Sbjct:   15 DIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVA-----------------LFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLG--EKCSIQDCQRMINKVDSDGDGCVDFEEFKKMMM 152          
The following BLAST results are available for this feature:
BLAST of FC875423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CML44_ARATH2.313e-2742.33Probable calcium-binding protein CML44 OS=Arabidop... [more]
CML3_ARATH2.170e-1734.62Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML28_ORYSJ6.981e-1631.93Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CML2_ARATH1.317e-1429.63Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML25_ARATH1.232e-1232.05Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML10_ORYSJ3.964e-1130.25Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CML23_ARATH5.178e-1126.75Probable calcium-binding protein CML23 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC31403G05EF CTVClemen1 Citrus clementina cDNA clone C31403G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875423 ID=FC875423; Name=FC875423; organism=Citrus clementina; type=EST; length=724bp
GAATCTAGAGTCAGTGGAAATGTAGAACTGGAATTGCATCTCTGGATTGT
TAGTTAGTTAATTAGCATTGTATATTATTGTCACTCACTCACAATATGGC
TCCTCTTACCGCCAATGACTTGCAAAGAATTTTCGAGAAGCTTGATCGAA
ATGGCGATGGCCTGGTGAGCTTGGAGGAACTCAACTGGGTTCTTGAAAGA
ATTGGGGTACATTTTACCCTTGAAGGGCTTGAAGCCCTAGTTGAAAAACC
AAGCCTCTGCTTCGATGAATTCTTGTTCTTCTGTGATTCCATCATATCGA
ATAATAATAATAATAATCCCAATGCTGCTGCTGATGCTTCCCAGAATGCT
GATGAAGCAGCTGATGATGACAGCGGCGACGAAGAGATCAGTGATCTTTA
CAAAACGTTCAGTGTGTTCGATGTGAATGGTGATGGATTCATTACAAGCG
AAGAGCTTCAGAGTGTGTTGGCGAGACTCGGATTGTGGGATGAGAAAAGC
AGCCAAGATTGCAGAAGCATGATTTACGTGTATGATACCAATTCTGATGG
GGTTCTTGATTTTGAAGAATTCAAGAACATGATGCTTCGTAGTACTGTTT
CTTAATTCGTTATTAATTTCGTGCCTGTTAATCTTGACCTTGTTTTTTTT
TTTTTTTTATAATCTGTGAAATTATGTTGATTATATGATGGTCGTAATTT
GTTAGACCCGAGATCACATATTAG
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