FC875434

Overview
NameFC875434
Unique NameFC875434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_DICDI (Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.991e-48
Identity = 114/226 (50.44%), Postives = 144/226 (63.72%), Query Frame = 1
Query:   40 KMNFNNVKVPKMPGDGAVSAXXXXXXXXXXXXYATTHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-VSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            ++NFNN+  PK+P  G+                A + SL NVEGGHRAI+FNR VG+K+KVY EGTH ++PWFER  IYDVRA+P  + S TGS DLQMV I +RVL++P   QLP IYRTLG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VS L                       L+D     ++D       F+I LDDVSIT L FG+E+  AIE
Sbjct:    7 QVNFNNI--PKLP-KGSFGGGFGLLALGGVGLLALS-SLVNVEGGHRAIVFNRFVGIKNKVYNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRTLGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFK-------------------RLVD----RAKD-------FNIELDDVSITHLNFGREYAAAIE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_YEAST (Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.496e-44
Identity = 99/190 (52.11%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  148 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-VSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            ++L+NV+GGHRAI+++RI GV  +++ EGTH + PW + P+IYDVRA+P  V S TG+ DLQMV I  RVL+RP   QLPTIYRTLG++Y+ERVLPSI++E LKAVVAQ+NASQLITQRE VS L                                E+     S F+I LDDVSIT +TF  EFT A+E
Sbjct:   56 NALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTKDLQMVNITCRVLSRPDVVQLPTIYRTLGQDYDERVLPSIVNEVLKAVVAQFNASQLITQREKVSRLI------------------------------RENLVRRASKFNILLDDVSITYMTFSPEFTNAVE 215          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_SCHPO (Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.125e-42
Identity = 96/194 (49.48%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-VSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +A   SL+NV+GGHRAI ++RI G+K+ +YPEGTH +IPW E  + YDVRA+P  + S TG+ DLQMV I  RVL+RP    LP IYRTLG +Y+ERVLPSI++E LK+VVAQ+NASQLITQRE VS L                                E+     + F+I LDDVS+T + F  EFT A+E
Sbjct:   30 FAVQTSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLV------------------------------RENLMKRAARFNILLDDVSLTHVQFSPEFTAAVE 193          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_CAEEL (Mitochondrial prohibitin complex protein 2 OS=Caenorhabditis elegans GN=phb-2 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.469e-42
Identity = 95/193 (49.22%), Postives = 122/193 (63.21%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VE GHRAIMFNRI G+   +Y EG H  IPWF+ P+IYD+RARPN + S TGS DLQMV IGLRVL+RP  + L  IYRTLG+N+ ERVLPSI +E LK VVA++NASQLITQR+  S+              ++I++     LD               F+I LDDVS+T L F  +++ A+E
Sbjct:   34 YGVAQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLV----------RKTLIER----ALD---------------FNIILDDVSLTELAFSPQYSAAVE 197          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: L2CC_DROME (Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2)37Cc PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.272e-42
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNVEGGHRA++F+R  G+K+ V  EGTH  IPW +RP+I+D+R++P  V   TGS DLQ V I LR+L RP+ DQLP IY  LG++Y+ERVLPSI  E LKAVVAQ++A +LITQRE+ S                                S++       F   LDD+S+T LTFG+EFT A+E
Sbjct:   26 ALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREMVSQRV-----------------------------SQELTVRAKQFGFILDDISLTHLTFGREFTLAVE 184          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_XENTR (Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.725e-41
Identity = 93/194 (47.94%), Postives = 119/194 (61.34%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            YA   S++ VEGGHRAI FNRI GV+ D +  EG H   PWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP+A +LP +Y+ LG +Y+ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F I LDDV+IT L+F +E+T A+E
Sbjct:   34 YAVKESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMYQRLGLDYDERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSIILDDVAITELSFSREYTAAVE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB_RAT (Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.171e-41
Identity = 91/188 (48.40%), Postives = 119/188 (63.30%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE+ S                                S+D     + F + LDDVS+T LTFGKEFT A+E
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQV-----------------------------SDDLTERAATFGLILDDVSLTHLTFGKEFTEAVE 184          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB_MOUSE (Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.171e-41
Identity = 91/188 (48.40%), Postives = 119/188 (63.30%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE+ S                                S+D     + F + LDDVS+T LTFGKEFT A+E
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQV-----------------------------SDDLTERAATFGLILDDVSLTHLTFGKEFTEAVE 184          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_RAT (Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 92/194 (47.42%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F + LDDV+IT L+F +E+T A+E
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSLILDDVAITELSFSREYTAAVE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_PONAB (Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 92/194 (47.42%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F + LDDV+IT L+F +E+T A+E
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSLILDDVAITELSFSREYTAAVE 198          
The following BLAST results are available for this feature:
BLAST of FC875434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_DICDI3.991e-4850.44Prohibitin-2 OS=Dictyostelium discoideum GN=phbB P... [more]
PHB2_YEAST3.496e-4452.11Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 P... [more]
PHB2_SCHPO1.125e-4249.48Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 ... [more]
PHB2_CAEEL1.469e-4249.22Mitochondrial prohibitin complex protein 2 OS=Caen... [more]
L2CC_DROME3.272e-4247.87Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2... [more]
PHB2_XENTR4.725e-4147.94Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV... [more]
PHB_RAT6.171e-4148.40Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1[more]
PHB_MOUSE6.171e-4148.40Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1[more]
PHB2_RAT8.060e-4147.42Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=... [more]
PHB2_PONAB8.060e-4147.42Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31403H06EF CTVClemen1 Citrus clementina cDNA clone C31403H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875434 ID=FC875434; Name=FC875434; organism=Citrus clementina; type=EST; length=715bp
GGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTTCAGGAAAAAATGAACTT
CAACAATGTCAAAGTTCCCAAGATGCCGGGTGATGGCGCAGTCTCTGCTC
TAATTAAGGTGGGGGTTATTGGTGGGCTTGGTTTGTACGCTACTACTCAT
AGTCTCTACAATGTCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCAT
AGTTGGTGTCAAAGATAAGGTTTATCCCGAGGGGACGCATCTTATGATTC
CATGGTTTGAGAGGCCTGTCATCTATGATGTTCGTGCACGACCCAACTTA
GTGGAGAGTACTACTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCT
TAGGGTGCTCACTCGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAA
CCCTTGGTGAGAACTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAA
ACTTTAAAAGCTGTGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACA
GCGTGAGGTCAGCAGCCTGGCCTGTTCTTTTTGACCTGGTTTCAGTTAGT
GTTAAAGTTTATCTATGATCGATCAATAAGCTTTTCATCTTTTAGACTGT
AAGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAGCCTATTTCACAT
TGCTCTGGATGATGTCTCCATTACGAGCCTTACTTTTGGCAAGGAATTTA
CATTTGCCATTGAAG
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