FC875435

Overview
NameFC875435
Unique NameFC875435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_SOLTU (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.096e-84
Identity = 158/195 (81.03%), Postives = 170/195 (87.18%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQAAATLMQPTKVG V A            VSKAFG++ + +R+SCSL  DLKD AQKC DA KIAGFALATSALVVSGA+AEGVPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKY AKKFCLEPTSFTVKAEGV+KN+ PDFQ TKL+TRLTYTLDEIEGPFEVSPDGT+KF EKDG+
Sbjct:    1 MAASLQAAATLMQPTKVGGVSARNNLQLRSSQS-VSKAFGLEPSASRLSCSLQTDLKDFAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGI 194          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_TOBAC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.655e-84
Identity = 159/195 (81.54%), Postives = 169/195 (86.67%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQAAATLMQPTKVGV PA            VSKAFGV+ A AR++CSL  +LKDLAQK  DA K+AGFALATSALVVSGA+AEGVPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGGV SFAFKPGKY AKKFCLEPTSFTVKAE VNKNAPPDFQ TKL+TRLTYTLDEIEGPFEVS DGT+KF EKDG+
Sbjct:    1 MAASLQAAATLMQPTKVGVAPARNNLQLRSAQS-VSKAFGVEPAAARLTCSLQTELKDLAQKFTDAAKVAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVASFAFKPGKYNAKKFCLEPTSFTVKAESVNKNAPPDFQKTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGI 194          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_SOLLC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 6.229e-82
Identity = 154/195 (78.97%), Postives = 167/195 (85.64%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQAAATLMQPTKVGV               VSKAFGV+    R++CSL  ++K+LAQKC DA KIAGFALATSALVVSGA+AEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTI+GGV SFAFKPGKY AKKFCLEPTSFTVKAEGV+KN+ PDFQ TKL+TRLTYTLDEIEGPFEVSPDGT+KF EKDG+
Sbjct:    1 MAASLQAAATLMQPTKVGV----RNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIEGGVGSFAFKPGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGI 191          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_PEA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.708e-77
Identity = 146/195 (74.87%), Postives = 164/195 (84.10%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQAAATLMQPTK+                 VSKAFG++  GA+++CSL +D K+LA KCV+A+KIAGFALATSALVVSGASAEG PKRLT+DEIQSKTY+EVKGTGTANQCPTIDGGVDSF+FKPGKY AKK CLEPTSFTVK+EGV KN P  FQNTKL+TRLTYTLDEIEGPFEVS DG++KF EKDG+
Sbjct:    1 MAASLQAAATLMQPTKL-----RSNTLQLKSNQSVSKAFGLEHYGAKVTCSLQSDFKELAHKCVEASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGI 190          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO2_ARATH (Oxygen-evolving enhancer protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.941e-75
Identity = 140/195 (71.79%), Postives = 160/195 (82.05%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MA SLQAAAT +QP K+   P+            V K+FG+DS+ AR++CSL++DLKD A KC DA KIAGFALATSALVVSGA AEG PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGG ++F+FK GKY  KKFC EPTSFTVKA+ V+KNAPPDFQNTKL+TRLTYTLDEIEGPFEV  DG++KF E+DG+
Sbjct:    1 MATSLQAAATFLQPAKIAASPSRNVHLRSNQT--VGKSFGLDSSQARLTCSLHSDLKDFAGKCSDAAKIAGFALATSALVVSGAGAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFKAGKYTGKKFCFEPTSFTVKADSVSKNAPPDFQNTKLMTRLTYTLDEIEGPFEVGSDGSVKFKEEDGI 193          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_FRIAG (Oxygen-evolving enhancer protein 1, chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.647e-75
Identity = 143/196 (72.96%), Postives = 167/196 (85.20%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGA-RISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MA+SLQAAATL+ P KVG  PA            +SKAFG D++ A R++CS+N+DL+D+AQKC DA K+AGFALATSALV+SGASAEGVPKRLT+DEIQSKTYMEVKG+GTANQCPTI+GG +SF +K GKY  KK CLEPTSFTVKAEG+NKNAPP+FQ TKL+TRLTYTLDEIEGPFEV+PDGT+KF EKDG+
Sbjct:    1 MASSLQAAATLI-PAKVGA-PARTHLRSNSH---LSKAFGFDNSTAGRLTCSINSDLRDIAQKCTDAAKLAGFALATSALVISGASAEGVPKRLTFDEIQSKTYMEVKGSGTANQCPTIEGGTESFGYKTGKYTLKKLCLEPTSFTVKAEGINKNAPPEFQKTKLMTRLTYTLDEIEGPFEVAPDGTVKFEEKDGI 191          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_SPIOL (Oxygen-evolving enhancer protein 1, chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.244e-74
Identity = 144/197 (73.10%), Postives = 162/197 (82.23%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSA--GARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQA+ T +QPTKV    A            V KAFGV+SA  G R+S SL +DLK+LA KCVDATK+AG ALATSAL+ SGA+AEG  KRLTYDEIQSKTY+EVKGTGTANQCPT++GGVDSFAFKPGKY AKKFCLEPT F VKAEG++KN+ PDFQNTKL+TRLTYTLDEIEGPFEVS DGT+KF EKDG+
Sbjct:    1 MAASLQASTTFLQPTKV----ASRNTLQLRSTQNVCKAFGVESASSGGRLSLSLQSDLKELANKCVDATKLAGLALATSALIASGANAEG-GKRLTYDEIQSKTYLEVKGTGTANQCPTVEGGVDSFAFKPGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGI 192          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO1_ARATH (Oxygen-evolving enhancer protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 9.016e-73
Identity = 133/195 (68.21%), Postives = 157/195 (80.51%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQ+ AT +Q  K+   P+            V K+FG++++ AR++CS  +D KD   KC DA KIAGFALATSALVVSGASAEG PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGG ++F+FKPGKY  KKFC EPTSFTVKA+ V+KNAPP+FQNTKL+TRLTYTLDEIEGPFEV+ DG++ F E+DG+
Sbjct:    1 MAASLQSTATFLQSAKIATAPSRGSSHLRSTQA-VGKSFGLETSSARLTCSFQSDFKDFTGKCSDAVKIAGFALATSALVVSGASAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFKPGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVNFKEEDGI 194          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_WHEAT (Oxygen-evolving enhancer protein 1, chloroplastic OS=Triticum aestivum GN=PSBO PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.102e-70
Identity = 138/195 (70.77%), Postives = 158/195 (81.03%), Query Frame = 3
Query:  105 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKAFGVDSAGARISCSLNNDLKDLAQKCVDATKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            MAASLQAAAT+M P K+G                V++AFGVD AGARI+CSL +D++++A KC DA K+AGFALATSAL+VSGA+AEG PKRLT+DEIQSKTYMEVKGTGTANQCPTIDGGVDSF FK GKY+ KKFCLEPTSFTVKAEG+ KN PP FQ TKL+TRLTYTLDE+EGP EV    T+KF EKDG+
Sbjct:    1 MAASLQAAATVM-PAKIG-----GRASSARPSSHVARAFGVD-AGARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGATAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPRFQKTKLMTRLTYTLDEMEGPLEVRRRRTLKFEEKDGI 188          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_VOLCA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.176e-26
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 3
Query:  318 FALATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTID-GGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            F  A +A+V + A   G    LTYDE+Q  TY++VKGTG AN CP ++ G  D      G Y+ + FC+EPTSFTVK E V K    +F  TKL+TRLTYTLD + G  +V  DG+ +  E+DG+
Sbjct:   32 FGQAAAAVVAASALVAGSANALTYDELQGLTYLQVKGTGIANTCPVLEKGSTDLSELSAGTYKLENFCIEPTSFTVKEESVFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDGSAELKEEDGI 156          
The following BLAST results are available for this feature:
BLAST of FC875435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSBO_SOLTU5.096e-8481.03Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_TOBAC6.655e-8481.54Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLLC6.229e-8278.97Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_PEA2.708e-7774.87Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO2_ARATH1.941e-7571.79Oxygen-evolving enhancer protein 1-2, chloroplasti... [more]
PSBO_FRIAG5.647e-7572.96Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SPIOL6.244e-7473.10Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO1_ARATH9.016e-7368.21Oxygen-evolving enhancer protein 1-1, chloroplasti... [more]
PSBO_WHEAT1.102e-7070.77Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_VOLCA2.176e-2647.20Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31403H07EF CTVClemen1 Citrus clementina cDNA clone C31403H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875435 ID=FC875435; Name=FC875435; organism=Citrus clementina; type=EST; length=764bp
GCTTCCTCCACATACAAAACAAGTAATCCTCTGTAAAGAGTTTAGTTTGT
TTCTTAGAAGATAAAGGGATACTAGCAAGTAACCCACAAGTGGTAGGGAG
CAAGATGGCAGCCTCGTTACAAGCCGCAGCTACACTGATGCAACCCACCA
AGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCA
CAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTC
TTGCTCTTTGAATAATGACTTGAAGGATTTGGCTCAGAAATGTGTTGATG
CTACCAAGATCGCTGGCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCG
GGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTATGATGAAATCCA
GAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCTAACCAGTGCC
CAACCATTGATGGCGGAGTTGACTCTTTTGCCTTCAAACCTGGCAAATAC
CAGGCTAAGAAGTTCTGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGA
GGGTGTCAACAAGAATGCCCCACCAGATTTCCAGAACACCAAGCTCATAA
CCCGCCTTACCTACACCCTTGACGAGATTGAGGGACCTTTTGAAGTGTCC
CCCGATGGCACCATTAAGTTTGTGGAGAAGGATGGAATGACTATGCTGCT
GTGACAGTTCACTGGCTGGAGCGACGTGTGCCTTCCTTTCACATCAACAT
TGGTACATCAGCAA
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