FC875450

Overview
NameFC875450
Unique NameFC875450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4169 contig Ccv1_Contig4169:49..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1D_ARATH (Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.515e-56
Identity = 105/112 (93.75%), Postives = 110/112 (98.21%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            MEPRVGNKFRLGRKIGSGSFGEIYLGTNI TNEE+AIKLENVKTKHPQLLYESKLYRILQGGTG+PNV+WFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLK+VLMLA+ M
Sbjct:    1 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIHTNEELAIKLENVKTKHPQLLYESKLYRILQGGTGVPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKSVLMLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KIN20_CAEEL (Casein kinase I isoform delta OS=Caenorhabditis elegans GN=kin-20 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.253e-45
Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGN+FRLGRKIGSGSFG+IYLG NIQTNEEVA+KLE VK+KHPQL  ES+LYRI+ GG GIP +RW G EGDYNV+VM+LLGPSLEDLFNFC RK SLKTVL+LA+ M
Sbjct:  183 MELRVGNRFRLGRKIGSGSFGDIYLGQNIQTNEEVAVKLECVKSKHPQLHIESRLYRIMLGGIGIPEIRWCGQEGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLLLADQM 294          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1_TOXGO (Casein kinase I OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.636e-45
Identity = 85/112 (75.89%), Postives = 101/112 (90.18%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVG K+RLGRKIGSGSFG+IY+G NI T +EVAIKLE++K+KHPQLLYESKLY++L GG GIP V W+G+EGDYNV+V+DLLGPSLEDLF+ C+RKLSLKTVLMLA+ M
Sbjct:    1 MEVRVGGKYRLGRKIGSGSFGDIYIGANILTGDEVAIKLESIKSKHPQLLYESKLYKLLAGGIGIPMVHWYGIEGDYNVMVIDLLGPSLEDLFSICNRKLSLKTVLMLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1E_CHICK (Casein kinase I isoform epsilon OS=Gallus gallus GN=CSNK1E PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.636e-45
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGNK+RLGRKIGSGSFG+IYLG NI T EEVAIKLE VKTKHPQL  ESK Y+++QGG GIP+++W G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNKYRLGRKIGSGSFGDIYLGANIATGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1DA_DANRE (Casein kinase I isoform delta-A OS=Danio rerio GN=csnk1da PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.791e-45
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGN++RLGRKIGSGSFG+IYLGT+I T EEVAIKLE VKTKHPQL  ESK+Y+++QGG GIP ++W G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNRYRLGRKIGSGSFGDIYLGTDITTGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1E_MOUSE (Casein kinase I isoform epsilon OS=Mus musculus GN=Csnk1e PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.761e-45
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGNK+RLGRKIGSGSFG+IYLG NI + EEVAIKLE VKTKHPQL  ESK Y+++QGG GIP+++W G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1E_HUMAN (Casein kinase I isoform epsilon OS=Homo sapiens GN=CSNK1E PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.761e-45
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGNK+RLGRKIGSGSFG+IYLG NI + EEVAIKLE VKTKHPQL  ESK Y+++QGG GIP+++W G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1D_RAT (Casein kinase I isoform delta OS=Rattus norvegicus GN=Csnk1d PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.761e-45
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGN++RLGRKIGSGSFG+IYLGT+I   EEVAIKLE VKTKHPQL  ESK+Y+++QGG GIP +RW G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1D_MOUSE (Casein kinase I isoform delta OS=Mus musculus GN=Csnk1d PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.761e-45
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGN++RLGRKIGSGSFG+IYLGT+I   EEVAIKLE VKTKHPQL  ESK+Y+++QGG GIP +RW G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
BLAST of FC875450 vs. ExPASy Swiss-Prot
Match: KC1D_HUMAN (Casein kinase I isoform delta OS=Homo sapiens GN=CSNK1D PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.761e-45
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 2
Query:  326 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLAESM 661
            ME RVGN++RLGRKIGSGSFG+IYLGT+I   EEVAIKLE VKTKHPQL  ESK+Y+++QGG GIP +RW G EGDYNV+VM+LLGPSLEDLFNFCSRK SLKTVL+LA+ M
Sbjct:    1 MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQM 112          
The following BLAST results are available for this feature:
BLAST of FC875450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC1D_ARATH3.515e-5693.75Casein kinase I isoform delta-like OS=Arabidopsis ... [more]
KIN20_CAEEL1.253e-4578.57Casein kinase I isoform delta OS=Caenorhabditis el... [more]
KC1_TOXGO1.636e-4575.89Casein kinase I OS=Toxoplasma gondii PE=2 SV=1[more]
KC1E_CHICK1.636e-4577.68Casein kinase I isoform epsilon OS=Gallus gallus G... [more]
KC1DA_DANRE2.791e-4576.79Casein kinase I isoform delta-A OS=Danio rerio GN=... [more]
KC1E_MOUSE4.761e-4576.79Casein kinase I isoform epsilon OS=Mus musculus GN... [more]
KC1E_HUMAN4.761e-4576.79Casein kinase I isoform epsilon OS=Homo sapiens GN... [more]
KC1D_RAT4.761e-4576.79Casein kinase I isoform delta OS=Rattus norvegicus... [more]
KC1D_MOUSE4.761e-4576.79Casein kinase I isoform delta OS=Mus musculus GN=C... [more]
KC1D_HUMAN4.761e-4576.79Casein kinase I isoform delta OS=Homo sapiens GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC31404B01EF CTVClemen1 Citrus clementina cDNA clone C31404B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875450 ID=FC875450; Name=FC875450; organism=Citrus clementina; type=EST; length=667bp
AAAATTAGATATGCATATGAAGATAGCAAAACGATAGCGTTTCATTAACC
TAACTCTGAGTCCTGACCATAATTTCTTTCCTTTTTTTTCGTTTTTCCTT
TTTAAAATCTTGAAGAAAAAGAAACCCTAGATCTTCAAATTTATCTTCCT
ACTCACATTTTTTGTCGAGGAAATTTCTTTGCAATTTTTATCGGTTGTCG
GTGCGGTTGATTCGCTGCAGACTGTCGTGTTTTTTTTATAGCTTTTTTAA
CTTTCATCTTTCGATAATTTCAGTTTTTAGTTAGGGTTCTGCAATAGGGC
TAGGGTTTCAATCGCAATTGTATCGATGGAGCCACGTGTCGGGAACAAAT
TTCGGTTGGGTCGGAAGATCGGAAGCGGGTCGTTTGGAGAGATCTATCTT
GGCACTAATATTCAGACAAATGAAGAGGTCGCCATTAAGCTTGAAAATGT
CAAGACAAAGCATCCGCAGTTGTTATATGAATCCAAATTATACAGAATAC
TACAGGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGAGTGGAAGGA
GACTATAATGTTCTGGTGATGGATTTACTTGGACCTAGTCTTGAAGATCT
ATTTAACTTCTGCAGCAGGAAACTTTCTTTGAAGACAGTTCTTATGCTTG
CAGAATCAATGGATCAT
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