FC875453

Overview
NameFC875453
Unique NameFC875453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875453_ssr26 microsatellite FC875453_ssr26:26..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 4.783e-86
Identity = 161/203 (79.31%), Postives = 173/203 (85.22%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +AFG FDDSFSL S +AYLAEFISTLLFVFAGVGSAIA+ K+T+DAALD  GLVAIA+CHGFALFVAVAIGANISGGHVNPAVTFGLA+GGQIT++TG+FYWIAQLLGS  A FLLK VTGGLAVPTH+                 TF LVYTVYATAADPKKGSLGTIAP+AIG IVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 5.473e-82
Identity = 156/203 (76.85%), Postives = 167/203 (82.27%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            IAFG   DSFS+GS KAY+AEFI+TLLFVFAGVGSAIA+NK+TADAALDP+GLVA+A+ H FALFV V+I ANISGGH+NPAVT GLA+GG ITILTG FYWIAQLLGS VA  LLK VT GLAVPTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.473e-82
Identity = 156/203 (76.85%), Postives = 167/203 (82.27%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            IAFG   DSFS+GS KAY+AEFI+TLLFVFAGVGSAIA+NK+TADAALDP+GLVA+A+ H FALFV V+I ANISGGH+NPAVT GLA+GG ITILTG FYWIAQLLGS VA  LLK VT GLAVPTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.633e-81
Identity = 156/203 (76.85%), Postives = 169/203 (83.25%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            IAFGRFDDSFS  S KAY+AEFISTL+FVFAGVGSAIA+ K+T  A LDP+GLVA+A+CHGF LFVAVAIGANISGGHVNPAVTFGLALGGQITILTG+FYWIAQLLG+IV + L++  T G+A PTH                  TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL AGPFSGG MNPARSFGPAV
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHG-LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAV 205
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.320e-79
Identity = 149/203 (73.40%), Postives = 165/203 (81.28%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            IAFG   DSFS+ S KAY+AEFI+TLLFVFAGVGSAIA+NK+T+DAALDP+GLVA+A+ H FALFV V++ AN+SGGH+NPAVT GLA+GG ITILTG+FYWIAQ LGS VA  LLK VT GL+VPTH                  TF LVYTVYATAADPKKGSLG IAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 IAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.014e-76
Identity = 146/203 (71.92%), Postives = 161/203 (79.31%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            I  G   DSFS+ S KAYL+EFI+TLLFVFAGVGSA+AF K+T+DAALDP+GLVA+A+ H FALFV V+I ANISGGH+NPAVT GLA+GG IT++TG FYWIAQ LGSIVA  LL  VT G +VPTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 IEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.631e-76
Identity = 147/203 (72.41%), Postives = 160/203 (78.82%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            I  G   DSFS+ S KAYL+EFI+TLLFVFAGVGSA+AF K+T+D ALDP+GLVAIAI H FALFV V+I ANISGGH+NPAVT GLA+GG IT++TG FYWIAQ LGSIVA  LL  VT G +VPTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 IEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.705e-75
Identity = 143/203 (70.44%), Postives = 161/203 (79.31%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +AFG   DSFS+ S KAY+AEFI+TLLFVFAGVGSAIAF ++T   ALDP+GLVAIA+ H  ALFV V++ AN SGGH+NPAVTFGLA+GG IT+LTG+FYW+AQLLG+ VA  LL+ VT G A+PTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 LAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.799e-75
Identity = 146/203 (71.92%), Postives = 163/203 (80.30%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +AFG F DS S  S KAY+AEFI+TLLFVFAGVGSAIA++++T   ALDP+GLVAIAI H FALFV V++ ANISGGH+NPAVTFGLA+GG ITILTGI YW+AQLLG+ VA FLL+ VT G A+PTH                  TF LVYTVYATAADPKKGSLGTIAP+AIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 LAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHG-VSGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAV 205
[Close]
BLAST of FC875453 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.463e-75
Identity = 146/203 (71.92%), Postives = 161/203 (79.31%), Query Frame = 3 
Query:  105 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGFMNPARSFGPAV 713
            +AFG   DSFS  S KAY+AEFI+TLLFVFAGVGSAIA+ ++T   ALDP+GLVAIAI H  ALFV V++ ANISGGH+NPAVTFGLA+GG ITILTG+FYWIAQLLG+ +A  LLK VT G A+PTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG MNPARSFGPAV
Sbjct:    4 LAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHG-VAGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 205
The following BLAST results are available for this feature:
BLAST of FC875453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
TIP21_ARATH4.783e-8679.31Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP2_TOBAC5.473e-8276.85Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC5.473e-8276.85Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP22_ORYSJ4.633e-8176.85Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA3.320e-7973.40Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP22_ARATH2.014e-7671.92Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_ARATH2.631e-7672.41Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP22_MAIZE1.705e-7570.44Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP23_MAIZE3.799e-7571.92Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP21_ORYSJ8.463e-7571.92Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC31404B04EF CTVClemen1 Citrus clementina cDNA clone C31404B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875453 ID=FC875453; Name=FC875453; organism=Citrus clementina; type=EST; length=715bp
GGTGCTCGATCGAGATAAAACCTTATCTTCTTCTTCTTCTTAAGAAAGAC
TCGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAAT
GGCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCA
AGGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGC
GTTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGA
TCCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTG
TCGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCC
GTCACTTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCAT
CTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCC
TCAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCT
GGAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGG
TTTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCAT
TGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATC
CTGGCCGCCGGCCCATTCTCCGGTGGTTTCATGAACCCGGCCCGTTCCTT
CGGGCCTGCCGTTGC
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