FC875469

Overview
NameFC875469
Unique NameFC875469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10234 contig Ccv1_Contig10234:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.868e-101
Identity = 183/193 (94.82%), Postives = 189/193 (97.93%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQAL 723
            MVKMT+IARVTDGLPLAEGLDDGRDL D++MYKQQVKALFKNLSRGQN+ASRMS+ETGPYVFHYIIEGRVCYLTMCDR+YPKKLAFQYLEDLKNEFERVNG  IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK KDLNRQAL
Sbjct:    1 MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 193          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_RAT (Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.007e-46
Identity = 94/193 (48.70%), Postives = 132/193 (68.39%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_PONAB (Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.007e-46
Identity = 94/193 (48.70%), Postives = 132/193 (68.39%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_MOUSE (Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.007e-46
Identity = 94/193 (48.70%), Postives = 132/193 (68.39%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_HUMAN (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.007e-46
Identity = 94/193 (48.70%), Postives = 132/193 (68.39%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_CHICK (Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 93/193 (48.19%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL++EF+  +G ++ T +RPY+FI+FDT+IQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTYIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_CRIGR (Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.526e-46
Identity = 93/193 (48.19%), Postives = 131/193 (67.88%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++  G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: S22BB_DANRE (Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.231e-44
Identity = 89/193 (46.11%), Postives = 129/193 (66.84%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDL-RDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIAR+ DGLPLA  + +   + RD + Y+ Q K LF+ L+  +   +R ++E G   FHY+IE  VCYL +C+  +PKKLAF YLEDL+ EF   +G ++ T +RPY+FI+FDT+IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L+S S+ Y    K LN ++
Sbjct:    1 MVLLTMIARLADGLPLAASMQEDEQMGRDLQQYQSQAKQLFRKLN--EQSPNRCTLEAGSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDTYIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: SC22B_XENTR (Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.099e-44
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHY+IE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FD +IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L++ S+ Y    K LN ++
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLN--EQSPTRCTLEAGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDNYIQKTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLSKKYRQDAKYLNMRS 191          
BLAST of FC875469 vs. ExPASy Swiss-Prot
Match: S22BA_DANRE (Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.377e-42
Identity = 87/193 (45.08%), Postives = 125/193 (64.77%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKGKDLNRQA 720
            MV  TMI RV D LPLA  + +D +  RD + Y+ Q K L + L+  +   +R ++E G   FHY+IE  VCYL +C+  +PKKLAF YLEDL+ EF    GA++ + +RPY+FI+FDT+IQKT K Y D+R +RN+  +N EL++V +IM  N++EVL  GE L  +   +S L+S S+ Y    K LN ++
Sbjct:    1 MVLQTMIVRVADSLPLAASMQEDEQSGRDLQKYQSQAKQLCRKLN--EQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRS 191          
The following BLAST results are available for this feature:
BLAST of FC875469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC22_ARATH1.868e-10194.8225.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
SC22B_RAT1.007e-4648.70Vesicle-trafficking protein SEC22b OS=Rattus norve... [more]
SC22B_PONAB1.007e-4648.70Vesicle-trafficking protein SEC22b OS=Pongo abelii... [more]
SC22B_MOUSE1.007e-4648.70Vesicle-trafficking protein SEC22b OS=Mus musculus... [more]
SC22B_HUMAN1.007e-4648.70Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
SC22B_CHICK1.315e-4648.19Vesicle-trafficking protein SEC22b OS=Gallus gallu... [more]
SC22B_CRIGR6.526e-4648.19Vesicle-trafficking protein SEC22b OS=Cricetulus g... [more]
S22BB_DANRE1.231e-4446.11Vesicle-trafficking protein SEC22b-B OS=Danio reri... [more]
SC22B_XENTR2.099e-4446.63Vesicle-trafficking protein SEC22b OS=Xenopus trop... [more]
S22BA_DANRE4.377e-4245.08Vesicle-trafficking protein SEC22b-A OS=Danio reri... [more]

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Properties
Property NameValue
Genbank descriptionC31404C08EF CTVClemen1 Citrus clementina cDNA clone C31404C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875469 ID=FC875469; Name=FC875469; organism=Citrus clementina; type=EST; length=723bp
AATCCCTTCATTTGATACACAGCTCTTTTCTCTCTCTGTCGACCCTTGTC
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTACGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACGCGTACCCAGCGGAATA
TTGCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGATAAGGGCA
AAGATTTGAATCGACAGGCTTTA
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