FC875473

Overview
NameFC875473
Unique NameFC875473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14251 contig Ccv1_Contig14251:2..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.829e-72
Identity = 140/220 (63.64%), Postives = 160/220 (72.73%), Query Frame = 1
Query:   46 MSLRNSCLSRRISRSF----GEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCKPS 693
            M L  S LSRRIS SF    GE   + +   +    +   SS+ SA                 +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D SQGSNAYVGKL SDFLG NFT+YDS+PPHNG KPS
Sbjct:    1 MPLSRSLLSRRISNSFRFHQGETTTAPESESIPPPSNMAGSSSWSA-----------------MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPS 203          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.119e-58
Identity = 106/160 (66.25%), Postives = 131/160 (81.88%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCKPSAA 699
            LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFPS LKQPGPREFP QC I+RNKK STFYLYL LT +  +KGKFL+AARR+RRG H+EYI+SLDA DLSQGSNAY+GKL SDF G NF IYDS+PP++G K S++
Sbjct:   37 LLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVSLDADDLSQGSNAYMGKLRSDFWGTNFKIYDSKPPYDGAKASSS 196          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.703e-57
Identity = 103/157 (65.61%), Postives = 124/157 (78.98%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCKPS 693
            LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS LKQPGPR+ P  C IRRNKK STFYLYL+LT + ++KGKFLLAARR+R GAH+EYIIS D  DL  GSN+YVGKL SDFLG  F IYDS+PP++G KPS
Sbjct:   55 LLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGAKPS 211          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.155e-53
Identity = 98/159 (61.64%), Postives = 125/159 (78.62%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCKPSA 696
            LLPEL+ E++RRVE +  + WP R+++V+CACVC+RWRE    +V+    SG+ITFPS LKQPGP++FP QC ++RNKK S FYLYL L     +KGKFL+AARR+RRG H+EY+ISLDA DLSQGSNAYVGKL SDF G NF IYD++PP++  K S+
Sbjct:   27 LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSS 185          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.830e-47
Identity = 86/153 (56.21%), Postives = 117/153 (76.47%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNG 681
            L PELL E++ R+E +E  WP R++VVACA VC+ WR ITK+IV+ P  SGK+TFP  LKQPGPR+   +C IRRN+ T T+YLY+ LT + ++ GKFLLAAR+ R+   ++Y+ISLD  D+S+GSN Y+GKL S+FLG  FT+YD+ PP++G
Sbjct:   55 LPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDG 207          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.190e-46
Identity = 87/153 (56.86%), Postives = 118/153 (77.12%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHN 678
            L PELL ++++R+E  E +WP R++VVACA VC+ WREI KDIV+SP + GK+TFP  LKQPGPR+   QC I+R+K   T+YLYL L+P+  SE GKFLLAA+R RR   +EYIIS+D+ ++S+ SN YVGK+ S+FLG  F +YD++PP+N
Sbjct:   62 LPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYN 214          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.421e-45
Identity = 86/155 (55.48%), Postives = 111/155 (71.61%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGCK 687
            L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS LKQPGPR+ P QC I+RNKK STF+LYL LT   ++  KFLLAARR RRG H EY I++++  L  GS + VG L S+F G  FTI D +PP+ G K
Sbjct:   54 LVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAK 208          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.421e-45
Identity = 85/153 (55.56%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNG 681
            L PELL E++ RVE +E  WP R++VVACA VC+ WR I ++IV++P  SG +TFP  LKQPGPR+ P +C I RN+ T T+YLY+ LT + ++ GKFLLAAR+ RR   +EY+ISLD  D+S+ +++YVGKL S+FLG  FTIYD+ PP+ G
Sbjct:   58 LPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAG 210          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.202e-44
Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 1
Query:  229 PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNG 681
            PELL +++ R+E +ED+WP R+NVV+CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL L  + S + GKFLLAA+R+RR   ++YIISL+  D+S+GSN Y+GKL S+FLG  FT+YD++P + G
Sbjct:   57 PELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPG 208          
BLAST of FC875473 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 83/154 (53.90%), Postives = 117/154 (75.97%), Query Frame = 1
Query:  223 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL-TPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNG 681
            L PELL ++IRR+E +E +WP R++VV+CA VCK WRE+ K+IV SP   GK+TFP  LKQPGPR+   QC I+R+K  ST++LYL L T   ++ GKFLL+A+R+R+   +EY+IS+DA ++S+ S+ Y+GKL S+FLG  F IYD++P +NG
Sbjct:   62 LPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNG 215          
The following BLAST results are available for this feature:
BLAST of FC875473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP7_ARATH8.829e-7263.64Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP1_ORYSJ1.119e-5866.25Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP9_ORYSJ4.703e-5765.61Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP10_ORYSJ3.155e-5361.64Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP6_ORYSJ9.830e-4756.21Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ2.190e-4656.86Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP2_ORYSJ2.421e-4555.48Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP11_ORYSJ2.421e-4555.56Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP3_ARATH1.202e-4455.92Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP8_ORYSJ5.963e-4453.90Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC31404C12EF CTVClemen1 Citrus clementina cDNA clone C31404C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875473 ID=FC875473; Name=FC875473; organism=Citrus clementina; type=EST; length=716bp
GAGGGAATCAAAGCCAAAATCAAAAGAAGAAGCGGGTGGGCGAAAATGTC
TCTGAGAAATTCGTGTCTCTCTCGAAGGATCTCGAGATCGTTCGGAGAGG
CACACAAATCTTCGAAAGAGACCGAACTCAATGCCGCTGACGACTCGGTC
GTGTCGTCGACCACGTCGGCGCCGATGGATTCCGGCGCCGCCGCTGCCCA
CTCCTCCGGGTCATGGGCCGGGTTGCTGCCCGAATTGCTAGGGGAGATCA
TAAGGCGCGTGGAGACCACAGAAGATAGCTGGCCCCATCGCCAAAACGTT
GTCGCTTGTGCTTGCGTTTGTAAGAGATGGAGGGAAATTACCAAAGATAT
CGTCAAGTCTCCTTTTCTTAGTGGCAAAATTACCTTCCCTTCTTGCCTTA
AACAGCCGGGTCCACGCGAGTTCCCTCATCAATGTCTAATAAGGCGGAAT
AAGAAGACCTCAACGTTCTACCTCTATCTTGCACTTACCCCATCATTTAG
CGAAAAGGGGAAGTTTCTTTTAGCAGCTCGGAGATATAGACGTGGTGCAC
ACAGTGAGTATATCATATCTCTTGATGCTGGTGATCTTTCTCAAGGGAGT
AATGCATATGTTGGCAAATTAAGTTCTGATTTCCTTGGGGACAACTTTAC
AATTTACGACAGTCGGCCGCCTCACAATGGGTGCAAACCCTCAGCAGCAG
GGGTAGTCGACGATTT
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