FC875478

Overview
NameFC875478
Unique NameFC875478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875478_ssr54 microsatellite FC875478_ssr54:54..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10236 contig Ccv1_Contig10236:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875478 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.266e-52
Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  239 MDPQIYG-------LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRP 736
            MD +IYG         FF +L+  + +AL    +            VLVALLDS YTE AELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI+P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRP
Sbjct:    1 MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRP 173          
BLAST of FC875478 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 107/177 (60.45%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  239 MDPQIYG-------LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLS---SKSSKRLIGSAEIFRPDDITRP 736
            MD  IYG        +FFFLL   ++ +  H  T            VLVALLDS YTE AELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGN+KSLQTLL+ HI+P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ SA I RPDD+TRP
Sbjct:    1 MDRCIYGCSVITIFFSFFFLLNASALESGHHNITGSGQINSNS---VLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRP 174          
BLAST of FC875478 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.897e-42
Identity = 95/161 (59.01%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  254 YGLAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRP 736
            YG   F LL+  + +                   VLVALLDSHYTE AELVEKALLLQTLEEAVG+HNITIFAP+N+ALER LDP FK FLLEP N+KSLQ+LLMFHILP RI S  WP   S S  H TL ND +HL+   +   + SAEI RPDD+ RP
Sbjct:    5 YGATKFLLLLFLTTSIATALPDNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWP---SLSHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRP 162          
BLAST of FC875478 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.716e-41
Identity = 96/159 (60.38%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  260 LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTEQAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRP 736
            L FF LL +   TALP K              VLVALLDSHYTE AELVEKALLLQTLEEAVG+HNITIFAP+N+ALE+ LDPEFK FLL+P N+KSLQ+LLMFHILP RI S   P   S    H TL ND +H ++      + SAEI +PDD+TRP
Sbjct:    7 LLFFLLLTISITTALPDKP----GSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITS---PQFSSAVVSHRTLSNDHLHFTNGK----VNSAEITKPDDLTRP 154          
The following BLAST results are available for this feature:
BLAST of FC875478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH1.266e-5261.85Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH3.569e-4760.45Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA16_ARATH5.897e-4259.01Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH1.716e-4160.38Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC31404D05EF CTVClemen1 Citrus clementina cDNA clone C31404D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875478 ID=FC875478; Name=FC875478; organism=Citrus clementina; type=EST; length=736bp
GGTGCTTCTTTTAGGTGTAGTTTCCCCATTCACTTGCTCAGTCGCGTGTC
TCACTCTCCTCTCCTCTCCTCTAACCACAAAGCAAAGCTTACCAAAAAAG
CTATAACGCCAAAGCTAAATCCCACCACCGAACAAGACCCACACGCAAAC
ACAGATTCATACGAATACAAAGCTCTCACATTTTGTCCATTCTTTGCAAA
GGAATTGCGTCTTTCGTCAACCGCAATCTTTGAGAGCCATGGATCCTCAA
ATCTATGGCCTCGCTTTCTTCTTCCTGTTGGTTGTTCCCTCCGTCACCGC
ATTGCCTCACAAAACGACATCGTCTTCGTCGCAACCTCAAATCAACTCCA
ACTCAGTTCTCGTCGCGCTTCTGGACTCGCATTACACTGAACAGGCCGAG
CTAGTTGAAAAGGCTCTCCTATTACAGACCCTCGAAGAAGCCGTCGGCAG
ACACAACATTACCATTTTTGCCCCTAAGAACGAAGCGCTAGAGCGCGAGC
TCGACCCGGAGTTCAAGCGGTTCTTACTCGAACCCGGCAACGTCAAGTCC
TTACAGACCCTCTTGATGTTCCACATTCTCCCCAGCCGAATCGGATCCCG
CAACTGGCCCGACGAGAAATCCGGCTCCAGAAAGCACAACACTCTCTGGA
ACGATTTCGTCCACTTGTCGAGCAAGAGCAGTAAAAGACTCATCGGTTCG
GCTGAGATTTTCCGACCCGACGACATTACCCGTCCC
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