FC875484

Overview
NameFC875484
Unique NameFC875484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10237 contig Ccv1_Contig10237:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPR2_ARATH (12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.074e-85
Identity = 150/192 (78.12%), Postives = 169/192 (88.02%), Query Frame = 2
Query:  143 IPLLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            +PLLTPY MG  NLS RVVLAPLTRQ+SY +VPQPHAILYYSQRT+ GG LIAEATGVSDTAQGYPDTPGIWTKE VEAWKPIVDAVHAKGGIFFCQI HVGRVSN+ +QP  QAPISCT KP+ PQ+R NG+D A+FTPPRRL+ +EIP IVNDFRLAARNA+EAGFDG+E+HGAHG+L+  + +  VNDR
Sbjct:   12 VPLLTPYKMGRFNLSHRVVLAPLTRQKSYGSVPQPHAILYYSQRTSPGGFLIAEATGVSDTAQGYPDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNRGFQPRRQAPISCTGKPIMPQMRANGIDEARFTPPRRLSIEEIPGIVNDFRLAARNAMEAGFDGVEIHGAHGYLIDQFMKDKVNDR 203          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPR1_ARATH (12-oxophytodienoate reductase 1 OS=Arabidopsis thaliana GN=OPR1 PE=1 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.403e-85
Identity = 151/192 (78.65%), Postives = 168/192 (87.50%), Query Frame = 2
Query:  143 IPLLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            +PLLTPY MG  NLS RVVLAPLTRQRSY NVPQPHA +YYSQRTT GG LI EATGVSDTAQGY DTPGIWTKE VEAWKPIVDAVHAKGGIFFCQI HVGRVSN  +QPNG+APISC+DKPL PQIR+NG+D A FTPPRRL  +EIP IVNDFRLAARNA+EAGFDG+E+HGA+G+L+  + + +VNDR
Sbjct:   10 VPLLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGVSDTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAPISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYLIDQFMKDTVNDR 201          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPR1_SOLLC (12-oxophytodienoate reductase 1 OS=Solanum lycopersicum GN=OPR1 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.235e-82
Identity = 145/192 (75.52%), Postives = 166/192 (86.46%), Query Frame = 2
Query:  143 IPLLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            IPL++P  MG   L  RVVLAPLTRQRSY  +PQPHAIL+YSQR+T GGLLI EAT +S+T  GY D PGIWTKEQVEAWKPIVDAVHAKGGIFFCQI HVGRVSN+D+QPNG+ PISCTD+ LTPQIR+NG+DIA FT PRRLTTDEIPQIVN+FR+AARNAIEAGFDG+E+HGAHG+L+  + +  VNDR
Sbjct:   14 IPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIRSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDR 205          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPRL2_ARATH (Putative 12-oxophytodienoate reductase-like protein 2 OS=Arabidopsis thaliana GN=At1g17990 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.840e-70
Identity = 131/192 (68.23%), Postives = 155/192 (80.73%), Query Frame = 2
Query:  143 IPLLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            IPLL PY MG  NLS RVVLAPLTR RSY N+PQP+A LYY+QRTT GGLLI+E+  VS+T+ GYPD PG+W ++QVEAWKPIVDAVH+KGGIFFCQI H GRV +QD QPNG+AP+S TDKPL  +    G    QF PPRRL +DE+P IVNDFR+AARNAIEAGFDG+E+HGAHG+L+  + +  VNDR
Sbjct:    7 IPLLMPYKMGPFNLSHRVVLAPLTRSRSYGNIPQPNAKLYYTQRTTPGGLLISESCVVSETSLGYPDLPGLWNRDQVEAWKPIVDAVHSKGGIFFCQIWHGGRVFHQD-QPNGEAPVSSTDKPLMCKNMYGG----QFKPPRRLRSDELPAIVNDFRIAARNAIEAGFDGVEVHGAHGYLIDQFLKDKVNDR 193          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPRL1_ARATH (Putative 12-oxophytodienoate reductase-like protein 1 OS=Arabidopsis thaliana GN=At1g09400 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.013e-67
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 2
Query:  167 MGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            M + NL+ R+V+AP+ R RSY N+PQPH  LYY QRTT GGLLI+EATGVS+TA  Y + PGIW KEQ+EAWKPIVDAVH+ GGIFFCQ+ H GRVS+QD QPNG++P+S TDKP             +FTPPRRL TDEIP I+NDFRLAARNA EAGFDG+E+HGAHG+L+  + + SVNDR
Sbjct:    1 MKNFNLTHRIVMAPMARMRSYGNIPQPHVALYYCQRTTPGGLLISEATGVSETAMAYQNMPGIWRKEQIEAWKPIVDAVHSHGGIFFCQLWHAGRVSHQDCQPNGESPVSSTDKPFADDPSN------EFTPPRRLRTDEIPTIINDFRLAARNATEAGFDGVEIHGAHGYLIDQFMKDSVNDR 178          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPR3_SOLLC (12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 107/197 (54.31%), Postives = 136/197 (69.04%), Query Frame = 2
Query:  146 PLLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIR------TNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            PL +PY MG  NLS RVVLAP+TR R+ NN+PQ     YY QR T GG LI E T +S T+ G+P  PGI+TKEQV  WK IVD VHAKG + FCQ+ HVGR S++ YQP G APIS T+KP++ + R      T+G+    +  PR + T EI Q+V D+R +A NAIEAGFDGIE+HGAHG+L+  + +  +NDR
Sbjct:   11 PLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGI----YPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDR 203          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPR3_ARATH (12-oxophytodienoate reductase 3 OS=Arabidopsis thaliana GN=OPR3 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.465e-50
Identity = 101/194 (52.06%), Postives = 134/194 (69.07%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQ----IRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLLTIY-EGSVNDR 715
            L + Y MG  +LS RVVLAP+TR R+ N VP      YY+QRTT GG LI+E T VS  + G+P  PGI++ EQVEAWK +V+AVHAKGG  FCQ+ HVGR S+  YQPNG +PIS T+KP++      +  +G  + ++  PR L   EIP++V D+ L+A NAI AGFDGIE+HGAHG+L+  + +  +NDR
Sbjct:   12 LFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHV-KYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDR 204          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OPRL_SOLLC (12-oxophytodienoate reductase-like protein OS=Solanum lycopersicum GN=OPR2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.272e-42
Identity = 90/179 (50.28%), Postives = 113/179 (63.13%), Query Frame = 2
Query:  143 IPLLTPYNMGSLNLSDRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTP-PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHG 676
            +PL TPY +G   L+ R+V   LTR RS NN PQ H   YYSQR T GGL+I+EA   SD ++  P+ PGIW +EQVEAWKP+V+ VH KGG+FFCQI H GR+S           +S     +     T   D     P P  L +D+IP IVNDFR+AARNAI+AGFDGIE++ + G
Sbjct:    9 VPLCTPYKLGRFKLTHRIVFPALTRNRSQNNTPQSHLTEYYSQRATNGGLIISEAAAASDISKECPNLPGIWNEEQVEAWKPVVNGVHEKGGVFFCQIWHSGRLS--------VPTVSALFFSIGIGWSTRPDDKVYAKPTPLPLESDKIPCIVNDFRIAARNAIKAGFDGIEINASSG 179          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: NEMA_ECOLI (N-ethylmaleimide reductase OS=Escherichia coli (strain K12) GN=nemA PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 85/187 (45.45%), Postives = 114/187 (60.96%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYN--NVPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRT-----NGVDI-AQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L +P  +G++  ++R+ +APLTR RS    ++P P    YY QR +  GL+I+EAT +S  A+GY   PGI + EQ+ AWK I   VHA+ G    Q+ H GR+S+   QP GQAP++     L+   RT     NG  I  + + PR L  +EIP IVNDFR A  NA EAGFD +ELH AHG+LL
Sbjct:    6 LYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAEYYRQRAS-AGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQLWHTGRISHASLQPGGQAPVA--PSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLL 189          
BLAST of FC875484 vs. ExPASy Swiss-Prot
Match: OYE3_YEAST (NADPH dehydrogenase 3 OS=Saccharomyces cerevisiae GN=OYE3 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 64/185 (34.59%), Postives = 94/185 (50.81%), Query Frame = 2
Query:  149 LLTPYNMGSLNLSDRVVLAPLTRQRSYN--NVPQPH-AILYYSQRTTKGG-LLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKP--LTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLL 685
            L  P  +G+  L+ R V+ PLTR R+ +  N+P    A +YY QR  + G ++I E T +S  A GY + PGIW+ EQV  WK I  A+H      + Q+  +G  S  D          C      +   ++    D         LT D+I Q + D+  AA+N+I AG DG+E+H A+G+LL
Sbjct:   17 LFEPIKIGNTQLAHRAVMPPLTRMRATHPGNIPNKEWAAVYYGQRAQRPGTMIITEGTFISPQAGGYDNAPGIWSDEQVAEWKNIFLAIHDCQSFAWVQLWSLGWASFPDVLARDGLRYDCASDRVYMNATLQEKAKDANNL--EHSLTKDDIKQYIKDYIHAAKNSIAAGADGVEIHSANGYLL 199          
The following BLAST results are available for this feature:
BLAST of FC875484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
OPR2_ARATH1.074e-8578.1312-oxophytodienoate reductase 2 OS=Arabidopsis tha... [more]
OPR1_ARATH1.403e-8578.6512-oxophytodienoate reductase 1 OS=Arabidopsis tha... [more]
OPR1_SOLLC3.235e-8275.5212-oxophytodienoate reductase 1 OS=Solanum lycoper... [more]
OPRL2_ARATH2.840e-7068.23Putative 12-oxophytodienoate reductase-like protei... [more]
OPRL1_ARATH5.013e-6765.22Putative 12-oxophytodienoate reductase-like protei... [more]
OPR3_SOLLC3.727e-5454.3112-oxophytodienoate reductase 3 OS=Solanum lycoper... [more]
OPR3_ARATH1.465e-5052.0612-oxophytodienoate reductase 3 OS=Arabidopsis tha... [more]
OPRL_SOLLC3.272e-4250.2812-oxophytodienoate reductase-like protein OS=Sola... [more]
NEMA_ECOLI1.127e-3445.45N-ethylmaleimide reductase OS=Escherichia coli (st... [more]
OYE3_YEAST2.438e-2134.59NADPH dehydrogenase 3 OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D12EF CTVClemen1 Citrus clementina cDNA clone C31404D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875484 ID=FC875484; Name=FC875484; organism=Citrus clementina; type=EST; length=717bp
TCGCCGGGGAATCATTTTATTTTCAGTCGCGTTAAGGATTCTCAATTTGC
TTGTAATTCTACTAAACATGGGAAACAGAGCAGAGGAGGCTAAGCAAAAT
CAAGAAGAGAACAACGGTAACATGGCCATTGAAACTCCCATCATCCCTCT
TCTCACTCCTTACAATATGGGCAGTCTCAATCTTTCTGATAGAGTTGTTT
TAGCACCACTGACTAGACAGAGATCATACAACAATGTTCCTCAGCCACAT
GCCATTTTGTATTACTCTCAAAGAACCACCAAAGGGGGTTTGCTTATAGC
CGAAGCCACTGGAGTTTCCGACACTGCTCAAGGGTATCCAGATACACCTG
GTATCTGGACAAAGGAGCAAGTTGAAGCATGGAAACCGATTGTAGATGCT
GTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGATTGGGCACGTTGGCAG
GGTTTCAAATCAAGATTATCAGCCAAATGGTCAAGCTCCAATTTCCTGTA
CAGACAAGCCATTGACACCTCAAATCCGCACTAATGGTGTTGATATTGCA
CAATTCACTCCTCCAAGGCGGCTAACGACAGATGAAATCCCTCAAATTGT
GAATGATTTCAGGCTTGCTGCAAGAAATGCAATTGAGGCTGGTTTCGATG
GCATTGAGCTCCACGGTGCACATGGCTTCCTATTGACCATTTATGAAGGA
TCAGTGAATGATCGAAC
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