FC875522

Overview
NameFC875522
Unique NameFC875522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875522_ssr9 microsatellite FC875522_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC875522 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  127 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK---IRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSHWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVLWVVVDGQPLYEDYENFVSYXLQAYKG---NVVPKACSNL 669
            V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+   +     F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YV WV V+G+PL ED    ++   Q Y+G   +V P + S+L
Sbjct:   73 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKKPDVCPSSTSSL 255          
BLAST of FC875522 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 59/188 (31.38%), Postives = 97/188 (51.60%), Query Frame = 1
Query:   67 CFLSGFVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSH-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVLWVVVDGQPL--YEDYEN 606
            C  + F    R +    N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+  + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++V WV+++G  L  ++ ++N
Sbjct:   58 CGFASFCDKHRAATH--NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKVLEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQN 241          
BLAST of FC875522 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 47/169 (27.81%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   91 ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANST---FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSHWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVLWVVVDG 579
            A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+           CQHGP+EC +N +  C ID +   +++ P + C++      KYS  E      E  P   + + +C +   G +L      +T SL P   ++ W+V++G
Sbjct:  127 AGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYSLDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING 290          
The following BLAST results are available for this feature:
BLAST of FC875522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GILT_HUMAN3.688e-1934.39Gamma-interferon-inducible lysosomal thiol reducta... [more]
YVRI_CAEEL4.508e-1731.38GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
YKJ2_CAEEL1.960e-1227.81GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31404H03EF CTVClemen1 Citrus clementina cDNA clone C31404H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875522 ID=FC875522; Name=FC875522; organism=Citrus clementina; type=EST; length=692bp
ATCTATGGCTTCTTCTTCTTATTCCTCACAAAAGCCTTATCTCTTGTCTT
TTACATTACCTTGTTCTGCTTCTTGTCTGGCTTTGTTTCAGCTTCTAGAA
CTTCACCTTCAGATGTCAACAGTAAAGTCAAGTTAGGTCTGTACTACGAG
TCTTTGTGTCCATACAGTGCCAATTTCATTATCAATTACTTGGTTAAAAT
CTTTGAAGATGTTGATCTGTTATCCATCGTTGATCTCCATCTTTCTCCCT
GGGGGAATGCCAAAATCAGAGCCAACAGCACCTTTGATTGCCAGCATGGC
CCTTCTGAATGCTTGCTGAACACTGTGGAAGCTTGTGCGATTGATAGTTG
GCCTGAATTGAACAAGCATTTCCCGTTTATCTACTGCATTGAGAGTTTAG
TGTACGAGCATAAGTATTCTCACTGGGAAACATGCTTTGATAAATTGGAA
CTGGATCCGAAGCCAATTGTTGATTGCTATACCAGTGGATATGGAACACA
GCTTGAGTTAAAATATGCAGCTGAGACAAATTCCCTTGTGCCTCCTCATC
AATATGTGCTTTGGGTTGTTGTGGATGGACAGCCACTGTATGAGGACTAC
GAAAATTTTGTAAGCTATATNCTGCAGGCTTATAAAGGCAATGTCGTGCC
TAAGGCTTGCAGCAACCTATCCCTCATCACGAACTACTATGG
back to top