FC875525

Overview
NameFC875525
Unique NameFC875525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875525_ssr34 microsatellite FC875525_ssr34:34..43. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875525_ssr83 microsatellite FC875525_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC875525 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.395e-48
Identity = 93/136 (68.38%), Postives = 114/136 (83.82%), Query Frame = 3
Query:  141 NLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 545
            +L LQEVLTV+P VCK+W RAV GPYCWQEIDIE WSNR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L
Sbjct:   24 HLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSL 159          
The following BLAST results are available for this feature:
BLAST of FC875525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW2_ARATH5.395e-4868.38F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
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Properties
Property NameValue
Genbank descriptionC31404H06EF CTVClemen1 Citrus clementina cDNA clone C31404H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875525 ID=FC875525; Name=FC875525; organism=Citrus clementina; type=EST; length=556bp
GGGGTTTTTTGTAGTTTTCTTTTCCTTTCTCTTTCTCTCTCTCTTTCTCT
CTATCACTCACTGACCATTTTGCCTTTCGTTGCTCTCTCTCTCTCTCTCT
GTCTTTTGCGTTTGCCCTACGTTTCAGGCGGACGAACCGAAATCTGTCAC
TCCAGGAGGTATTAACCGTGATACCAGGGGTTTGCAAATCATGGCGTAGA
GCAGTAATTGGACCATATTGCTGGCAAGAGATTGACATTGAGGAATGGAG
TAATCGGTGCCAACCGGACCACCTCGATCGGATGGTTGAAATGTTGATCA
CAAGAAGTTCTGGATCTCTCCGCAAGCTCTGTGTTTCTGGCCTGCACAAT
GATATGATGTTTTCCTTGATTGCAGAAAATGCTGGTTCCCTTCAGACATT
GCGACTTCCAAGAAGTGAAATGAGTGACTCCATAGTGGCTCAGATAGCTG
GAAGGTTGTCTGCGGTCACTTTCTTGGATTTGAGCTATTGCAGTAAAATT
GGTGCTCCTGCTTTGGAGGCCATAGGAAAACACTGTAAATTGCTTGTGGT
TCTATG
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