FC875527

Overview
NameFC875527
Unique NameFC875527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10252 contig Ccv1_Contig10252:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 75/221 (33.94%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 636
            G+P W L  P DA  Y++ P    FFK +G ++ S  G FF++WYS++LI HG+ +L  A+  F    V++  K+  IH  Y   SH +ELTAG+YN  KRDGY  +A M +K+   +    +++ D     E+ S+P+ L+ ++ +   K G+EV+G+N+  T    G+ Q+  N     V         +  FTY R+    F   +F  F K VR ++
Sbjct:  228 GHPEWDL--PEDAGEYNDKPEETGFFKKDG-TYVSEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMH 445          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 132.109 bits (331), Expect = 2.792e-30
Identity = 78/240 (32.50%), Postives = 129/240 (53.75%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESV 693
            GN  W + G   A +Y+++P+   FF+ NG ++++  G FFL+WYS++LI HG+ +L  A+  F    V+I  K+  IH WY   SH +ELTAGFYN A RDGY  +A M A++   +    +++ D  QP E+ S+P+ L+ Q+ ++  K  ++V+G+N+        + QM  N+    V         +   TY R+       ++F  F KFV+     ++H D  P    ++ +V
Sbjct:  227 GNADWEMPGK-GAGTYNDTPDKTEFFRPNG-TYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVK-----KMHADLDPSPNAISPAV 459          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.173e-28
Identity = 74/221 (33.48%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF---------EQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 636
            G+P W L  P DA  Y+++P    FFKDNG ++ +  G FFLSWYS++LI HG+ +L  A+  F    V +  KI  IH WY+  +H +ELTAG+YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ V+ +N+        +         + + KN   E+ +  FTY R+       +++ +F  FV  ++
Sbjct:  223 GHPEWEL--PDDAGEYNDTPEKTQFFKDNG-TYLTEKGKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.532e-28
Identity = 74/228 (32.46%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 657
            G+P W L  P DA  Y++ P S  FFK NG ++ +  G FFL+WYS++L++HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG+YN   RDGY  +A M +++   +    +++ D  QP ++ S P+ L+ Q+ +   +  + V+G+N+        + Q+  N   + V       + +F  TY R+        +F  F KFV     L++H D
Sbjct:  226 GHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 445          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.613e-28
Identity = 76/247 (30.77%), Postives = 127/247 (51.42%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF---------EQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN-------------QLELHGDDLPVEE 675
            G+P W L    DA +Y+++P    FF DNG ++++  G FFL+WYS++LI HG+ +L  A+  F    V +  K+  IH WY   +H +ELTAG+YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ ++ +N+        +         + + KN   E+ +  FTY R+    F  +++ +F  FVR ++              LE    ++P+EE
Sbjct:  223 GHPEWDLLD--DAGTYNDTPEKTQFFADNG-TYQTDKGKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEE 466          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 73/229 (31.88%), Postives = 123/229 (53.71%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDD 660
            G+  W L  P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V +  K+  IH WYK ++H +ELTAG+YN   RDGY  +A+M +++   +    +++ D  Q  ++ S+P+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV  ++  + H DD
Sbjct:  226 GHSEWEL--PDDAGTYNDIPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMHADQSHCDD 451          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 73/227 (32.16%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 636
            G+P W    P+DA  Y+++P    FF+DNG ++ +  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG+YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N               LFG      FTY R+       +++ +F  FV  ++
Sbjct:  223 GHPEWEF--PNDAGQYNDTPERTQFFRDNG-TYLTEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 72/228 (31.58%), Postives = 122/228 (53.51%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 657
            G+  W L  P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V++  K+  IH WYK ++H +ELTAG+YN   RDGY  +A+M +++   +    +++ D  Q  ++ S P+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV     +++H D
Sbjct:  226 GHSEWEL--PDDAGTYNDVPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFV-----VKMHAD 445          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 73/227 (32.16%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 636
            G+P W    P+D   Y+++P    FF+DNG ++ S  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG+YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N               LFG      FTY R+       +++ +F  FV  ++
Sbjct:  223 GHPEWEF--PNDVGQYNDTPERTQFFRDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of FC875527 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 72/228 (31.58%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    1 GNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 657
            G+  W L  P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG+YN   RDGY  +A++ +++   +    +++ D  Q  ++ SSP+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV     +++H D
Sbjct:  226 GHSEWEL--PDDAGTYNDVPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFV-----VKMHAD 445          
The following BLAST results are available for this feature:
BLAST of FC875527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_ARATH2.138e-3033.94Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_IPOBA2.792e-3032.50Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_WHEAT1.173e-2833.48Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_SOYBN1.532e-2832.46Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE2.613e-2830.77Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_TRIRP5.822e-2831.88Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_HORSP5.822e-2832.16Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_VIGUN1.694e-2731.58Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_HORVU1.694e-2732.16Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_MEDSA6.437e-2731.58Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31404H08EF CTVClemen1 Citrus clementina cDNA clone C31404H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875527 ID=FC875527; Name=FC875527; organism=Citrus clementina; type=EST; length=700bp
GGAAATCCTTTATGGGGACTCCGTGGTCCCCATGATGCCCCCAGTTATGA
CGAGTCACCTAACTCAAACAGTTTCTTTAAGGATAATGGTGGTTCCTGGG
AGTCTCCCTATGGTGACTTTTTCCTTTCCTGGTACTCAAGTCAGTTAATT
TCTCATGGAAATTGCCTTCTTTCCCTTGCCTCATCAACTTTTGGCGAAAC
TGGAGTGTCAATATATGGAAAAATCCCACTCATTCACTCATGGTACAAAA
CTCGATCCCATCCTTCTGAACTGACAGCTGGCTTCTATAACACAGCCAAG
AGAGATGGCTATGCTGCGGTTGCTGAAATGTTTGCAAAGAATTCTTGCAA
AATGATCTTGCCGGGAATGGACCTTTCAGATGAGCACCAGCCTCGCGAGT
CCTTCTCAAGTCCTGAATCATTACTTGCCCAAATCAGAACAGCTTGCAAT
AAACATGGTGTCGAGGTTTCTGGGCAGAACTCATCAGTTACAGGAGCTCC
TGGCGGTTTTGAGCAAATGAAGAAAAATTTGTTTGGTGAGAATGTAGTGG
ACTTGTTCACTTATCAGAGAATGGGAGCATATTTCTTTTCACCTGAGCAT
TTCCCTTCTTTCACCAAGTTTGTTCGGAACCTCAATCAACTCGAATTGCA
TGGCGATGATCTACCAGTAGAGGAAGAAGTCACTGAATCTGTACATACGA
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