FC875528

Overview
NameFC875528
Unique NameFC875528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10253 contig Ccv1_Contig10253:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_BOVIN (Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 57/149 (38.26%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  207 ERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            E ++ + P   ALLK ++E +  + ++VQ+L  KV+   YPT  G+S LE K  LLL Y   + + +L KA G S++ HP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                D L+++P+P  ++
Sbjct:    5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMM 138          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_MOUSE (Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 55/149 (36.91%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  207 ERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            E ++ +      LLK ++E +  + +++Q+L TKV+   Y T  G+S+LE K  LLL Y   + + +L KA G S++ HP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                D L+++P+P  +V
Sbjct:    5 EVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMV 138          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_HUMAN (Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            ++ + P    LLK ++E +  + ++V+SL  KV+   YPT  G+S+LE K  LLL Y   + + +L KA G S++ H  V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                D L+++P+P  ++
Sbjct:    7 LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE---------------NDPLRFKPHPSNMM 138          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_XENTR (Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 54/149 (36.24%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  207 ERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            E + ++ P    L + +++ + K+ + VQ+L  KV+   Y T  G+S+LE K  LLL Y Q + + +L K  G SI+ +P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                D L+++PNP  L+
Sbjct:    6 EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE---------------NDPLRFKPNPQNLI 139          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDNB_XENLA (Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            + ++ P    L   +++ + K+ + VQ L  KV+ + Y T  G+S+LE K  LLL Y Q + + +L K  G SI+ +P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                D L+++PNP  L+
Sbjct:    7 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLM 138          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDN_DANRE (Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  195 SISDERVKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            ++ ++ + ++ P    LL  + E +  + S V+ LI KV+   Y T  G+S+L+ ++ LLL Y Q I + +  K +G S++++  +  LV IR  LEK+RP+D+KL+YQI KL    V G+  E                D L +RPNP  LV
Sbjct:    5 AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE---------------NDPLHFRPNPQSLV 142          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: NGDNA_XENLA (Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLV 653
            + ++ P    L   +++ + K+ + VQ L  KV+   Y T  G+S+LE K  LLL Y Q + + +L K  G SI+ +P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                D L+++PNP  L+
Sbjct:    8 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLM 139          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: SAS10_RAT (Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSA 584
            ++KE+P+L  L++++K  L +++ +++ LI  V+    P   G  YL+ K+ L LNYC +I +YL+ KA+ +    HPV+  LV  R  + K+  +D+KL  +I+ L + + G    + +NP A
Sbjct:  215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGK-KDLNPKA 337          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: SAS10_MOUSE (Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 38/113 (33.63%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVG 551
            +KKE+P+L  L+++++  L +++ +++ L+  V+    PT  G  YL+ K+ L LNYC +I +YL+ KA+ +    HPV+  LV  R  + K+  +D+KL  +I+ L + + G
Sbjct:  215 LKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDG 327          
BLAST of FC875528 vs. ExPASy Swiss-Prot
Match: SAS10_HUMAN (Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 36/111 (32.43%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  213 VKKEAPQLAALLKEMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 545
            ++KE+P+L  L++++K  L +++ +++ L+  V+    P   G  YL  K+ L LNYC +I +YL+ KA+ +    HPV+  LV  R  + K+  +D+KL  +I+ L +++
Sbjct:  219 LRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLK 329          
The following BLAST results are available for this feature:
BLAST of FC875528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NGDN_BOVIN4.750e-2138.26Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1[more]
NGDN_MOUSE1.058e-2036.91Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1[more]
NGDN_HUMAN6.860e-2036.73Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1[more]
NGDN_XENTR5.807e-1936.24Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=... [more]
NGDNB_XENLA2.207e-1836.05Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn... [more]
NGDN_DANRE2.882e-1833.99Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1[more]
NGDNA_XENLA2.882e-1836.05Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=... [more]
SAS10_RAT8.677e-1533.06Something about silencing protein 10 OS=Rattus nor... [more]
SAS10_MOUSE1.933e-1433.63Something about silencing protein 10 OS=Mus muscul... [more]
SAS10_HUMAN1.253e-1332.43Something about silencing protein 10 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC31404H09EF CTVClemen1 Citrus clementina cDNA clone C31404H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875528 ID=FC875528; Name=FC875528; organism=Citrus clementina; type=EST; length=667bp
GTTCTCATCCAGTCTTCGTTCTTTGTTACTTCGGTGAGTAGCAAGCCGAT
GCGCTAATTTCCATAAGAATTCCGTACAACTTAAACGTAACTCTATTTTA
TACGCATCTTAAAATTTACAAAAACTTAGCTGCAGAACGGCGAAGAGCTG
GTGGTTATTATTTATAAATCATGGAGGAGGCTACCGGCAACCACTCGATC
TCTGACGAAAGAGTGAAGAAAGAAGCGCCTCAGTTGGCGGCGTTGTTAAA
AGAAATGAAAGAAGGGTTGGATAAACTGAGGAGTAAAGTACAATCTCTAA
TTACAAAGGTGAAAGGGAATAATTATCCGACAGTGGATGGAATTAGCTAT
CTTGAAGCCAAGCACTTGCTGCTTCTTAATTACTGCCAATCAATTGTCTA
TTATTTACTTCGTAAGGCTAAGGGTTTATCGATTGAGGAACATCCTGTTG
TTCGGAGCCTTGTCGAAATTAGATTATTTTTAGAGAAGATTCGTCCGATT
GACAGAAAGCTTCAGTACCAAATTCAGAAGCTTACAAGTGTAAGGGTTGG
TGGGAATGCAATAGAGCCAGTGAATCCAAGTGCAAATGAGTCGGGTGAGC
CGCAAAAGACGGAAGATTTATTGAAATATCGACCTAACCCAGACATGCTT
GTCAGNCAAACTGATAT
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