FC875533

Overview
NameFC875533
Unique NameFC875533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.750e-60
Identity = 115/189 (60.85%), Postives = 146/189 (77.25%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHR-DPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTY-YIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I+IR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++  R +P   YN LK+NVD L+LIQ+GLTLSD +GNLPDLG      YIWEFNF+DFD+ R  HA DS+ELL+R GIDFE+NR  G++S RFAEL+MSSGL+ N+ V+WVTFHSAYDFGYLVK LT+R LP  L EF+  +  FF
Sbjct:   12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFF 200          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.362e-58
Identity = 117/188 (62.23%), Postives = 142/188 (75.53%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            ++ REV+  NL SEFE I  +ID YP ISMDTEFPGV+ + D  +R  +P   Y  LKANVD L+LIQ+GLTLSD  GNLPDLG      +IWEFNF+DFD+AR AHA DS+ELL+RQGIDFE+N   G++S RFAEL+MSSGLV N++V+WVTFHSAYDFGYL+K LT+R LP  L EF   + V F
Sbjct:   17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD--LRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLF 202          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.570e-54
Identity = 103/187 (55.08%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I IREV+  NL SE   IR ++D +P ++MDTEFPG+V RP    +  +   +Y  LK NV++L +IQ+GLT SDE+GNLP  G+ + Y IW+FNF++FD+    +A DS+ELL++ GIDF KN EFGIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LPE  + F   + V+F
Sbjct:   10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF 195          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.237e-52
Identity = 101/187 (54.01%), Postives = 139/187 (74.33%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I+IREV+++NL+ EF  IR ++D++  I+MDTEFPGVV++P +  ++ +   NY  LK NVDLL LIQ+GLT SDE GNLP  G+   + IW+FNF++F+I    +A +S+ELL++ GIDF+KN E GID VRF EL+MSSG+VLN  ++WVTFH  YDFGYLVK LT + LP K ++F   + V+F
Sbjct:   10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDK-FCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF 194          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.748e-50
Identity = 100/187 (53.48%), Postives = 134/187 (71.66%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I IREV+  NL  E + IR ++D +P ++MDTEFPG+VVRP    +  +   +Y  LK NV++L +IQ+GLT S+E+GNLP  G+   Y IW+FNF++FD+     ALDS+ELLK+ GID  KN   GIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LP+  ++F   + V+F
Sbjct:   10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKS-NADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDK-YCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF 194          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.177e-48
Identity = 98/192 (51.04%), Postives = 131/192 (68.23%), Query Frame = 1
Query:  166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I IREV+  NL  E   I   ID +P ++MDTEFPG+V +     P+ N        NY+ LKANV++L LIQ+GLTLSDE+GNLP  G+     IW+FNF++F++     ALDS+ELL++  ID EKN E G+D+ RFAELLM SG+VLN  + WVTFH  YDFGYL+K L+ + LPE++S+F  ++  FF
Sbjct:   14 IEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF 204          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.055e-43
Identity = 93/185 (50.27%), Postives = 124/185 (67.03%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            IR+V+  NL  E   I +LI+RYP++SMDTEFPGVV RP    +  D   +Y  L+ANVD L +IQIGL LSDEEGN P          W+FNF  F++    +A +S+ELL + GIDF+K++E GI+   FAELL+ SGLVL ++VTW+TFHS YDF YL+K +TQ  LP +  EF   + ++F
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY-HYQTLRANVDSLKIIQIGLALSDEEGNAPVEAC-----TWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYF 199          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.017e-38
Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 1
Query:  169 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            +I EV+  NL  E  +IR ++  Y  I+MDTEFPGVVVRP    R       Y  L+ NVDLL +IQ+GLT ++E+G  P     S    W+FNFK F++    ++ DS++LL   G+ F+K+ E GID++ FAELLM+SG+VL  +V W++FHS YDFGY+VK LT   LPE+  EF   + +FF
Sbjct:   11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.017e-38
Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 1
Query:  169 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            +I EV+  NL  E  +IR ++  Y  I+MDTEFPGVVVRP    R       Y  L+ NVDLL +IQ+GLT ++E+G  P     S    W+FNFK F++    ++ DS++LL   G+ F+K+ E GID++ FAELLM+SG+VL  +V W++FHS YDFGY+VK LT   LPE+  EF   + +FF
Sbjct:   11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF 189          
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726
            I EV+  NL  E ++IR +I +Y  ++MDTEFPGVV RP    R  +    Y  L+ NVDLL +IQ+GLT  +E+G  P   S      W+FNFK F++    +A DS+ELL   GI F+K+ E GI++  FAELLM+SG+VL + V W++FHS YDFGYL+K LT   LPE+  +F   + +FF
Sbjct:   12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189          
The following BLAST results are available for this feature:
BLAST of FC875533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH2.750e-6060.85Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH3.362e-5862.23Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH8.570e-5455.08Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH1.237e-5254.01Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH5.748e-5053.48Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH9.177e-4851.04Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO3.055e-4350.27Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT8_MOUSE1.017e-3846.77CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN1.017e-3846.77CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_MOUSE8.610e-3847.03CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC31405A02EF CTVClemen1 Citrus clementina cDNA clone C31405A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875533 ID=FC875533; Name=FC875533; organism=Citrus clementina; type=EST; length=728bp
GGAATTTCCTCTAACTCGAGACCAAACCCTAGAAATTATTAAAAAAAAAA
ATCTAAAAAAAAAATAAAATTAAAGCCTTTTCAAGAATTGAATCAATTGG
ATCAGGATCCGACAAGATTTCTTGCCATGTCAGACGTACCGCCGCCGCAG
CCTCCGAAGCCTCGGATCTTGATCCGAGAGGTATTTGAGTTTAACTTGAT
CTCCGAGTTCGAAAGGATCAGAGCTTTAATTGACAGATATCCGATAATCT
CAATGGACACGGAGTTCCCTGGCGTCGTGGTCCGACCCGATTCGAACATC
CGTCACCGTGACCCGGCTGCGAATTACAATGGACTCAAGGCAAATGTGGA
TCTGTTAAATCTGATCCAAATAGGTTTAACCTTATCGGACGAGGAAGGGA
ATCTTCCGGACCTCGGGTCGGGTTCTACGTATTATATTTGGGAGTTCAAT
TTTAAGGACTTCGATATCGCGCGTCACGCCCACGCTCTCGATTCGGTTGA
GCTGTTGAAACGACAAGGTATTGATTTTGAAAAGAATCGTGAATTTGGAA
TCGACTCGGTAAGATTTGCTGAATTGTTGATGTCGTCAGGGCTTGTATTA
AACAAGGACGTTACATGGGTGACCTTCCACAGCGCCTATGATTTCGGGTA
TTTGGTTAAATGCTTGACACAGCGGGTCTTGCCTGAGAAATTGAGTGAGT
TTGTGACTCGAGTGGGCGTGTTTTTTGG
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