FC875533
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 2.750e-60 Identity = 115/189 (60.85%), Postives = 146/189 (77.25%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHR-DPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTY-YIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I+IR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++ R +P YN LK+NVD L+LIQ+GLTLSD +GNLPDLG YIWEFNF+DFD+ R HA DS+ELL+R GIDFE+NR G++S RFAEL+MSSGL+ N+ V+WVTFHSAYDFGYLVK LT+R LP L EF+ + FF Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFF 200
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 3.362e-58 Identity = 117/188 (62.23%), Postives = 142/188 (75.53%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 ++ REV+ NL SEFE I +ID YP ISMDTEFPGV+ + D +R +P Y LKANVD L+LIQ+GLTLSD GNLPDLG +IWEFNF+DFD+AR AHA DS+ELL+RQGIDFE+N G++S RFAEL+MSSGLV N++V+WVTFHSAYDFGYL+K LT+R LP L EF + V F Sbjct: 17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD--LRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLF 202
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 8.570e-54 Identity = 103/187 (55.08%), Postives = 136/187 (72.73%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I IREV+ NL SE IR ++D +P ++MDTEFPG+V RP + + +Y LK NV++L +IQ+GLT SDE+GNLP G+ + Y IW+FNF++FD+ +A DS+ELL++ GIDF KN EFGIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LPE + F + V+F Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF 195
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.237e-52 Identity = 101/187 (54.01%), Postives = 139/187 (74.33%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I+IREV+++NL+ EF IR ++D++ I+MDTEFPGVV++P + ++ + NY LK NVDLL LIQ+GLT SDE GNLP G+ + IW+FNF++F+I +A +S+ELL++ GIDF+KN E GID VRF EL+MSSG+VLN ++WVTFH YDFGYLVK LT + LP K ++F + V+F Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDK-FCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF 194
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 5.748e-50 Identity = 100/187 (53.48%), Postives = 134/187 (71.66%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I IREV+ NL E + IR ++D +P ++MDTEFPG+VVRP + + +Y LK NV++L +IQ+GLT S+E+GNLP G+ Y IW+FNF++FD+ ALDS+ELLK+ GID KN GIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LP+ ++F + V+F Sbjct: 10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKS-NADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDK-YCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF 194
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 9.177e-48 Identity = 98/192 (51.04%), Postives = 131/192 (68.23%), Query Frame = 1 Query: 166 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I IREV+ NL E I ID +P ++MDTEFPG+V + P+ N NY+ LKANV++L LIQ+GLTLSDE+GNLP G+ IW+FNF++F++ ALDS+ELL++ ID EKN E G+D+ RFAELLM SG+VLN + WVTFH YDFGYL+K L+ + LPE++S+F ++ FF Sbjct: 14 IEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF 204
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.055e-43 Identity = 93/185 (50.27%), Postives = 124/185 (67.03%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 IR+V+ NL E I +LI+RYP++SMDTEFPGVV RP + D +Y L+ANVD L +IQIGL LSDEEGN P W+FNF F++ +A +S+ELL + GIDF+K++E GI+ FAELL+ SGLVL ++VTW+TFHS YDF YL+K +TQ LP + EF + ++F Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY-HYQTLRANVDSLKIIQIGLALSDEEGNAPVEAC-----TWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYF 199
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.017e-38 Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 1 Query: 169 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 +I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++LL G+ F+K+ E GID++ FAELLM+SG+VL +V W++FHS YDFGY+VK LT LPE+ EF + +FF Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.017e-38 Identity = 87/186 (46.77%), Postives = 120/186 (64.52%), Query Frame = 1 Query: 169 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 +I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++LL G+ F+K+ E GID++ FAELLM+SG+VL +V W++FHS YDFGY+VK LT LPE+ EF + +FF Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF 189
BLAST of FC875533 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38 Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 1 Query: 172 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFF 726 I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189 The following BLAST results are available for this feature:
BLAST of FC875533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875533 ID=FC875533; Name=FC875533; organism=Citrus clementina; type=EST; length=728bpback to top |