FC875541

Overview
NameFC875541
Unique NameFC875541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9420 contig Ccv1_Contig9420:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.415e-71
Identity = 131/188 (69.68%), Postives = 148/188 (78.72%), Query Frame = 1
Query:  103 VPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLLLYYKAAMLP 666
            VPANE FKFVNEGE G +I+EY  DYR +  F SPFQL FYN TP A+TLALR G++R E L RWVWEANRG PV ENAT + G DGNLVLA +NG V WQ++T+NKGVVG K+LPNGNMVL+DSKG F+WQSFD PTDTLLVGQSL++G VTKLVSR S  ENV+GPYS VME   L LYYK    P
Sbjct:   26 VPANETFKFVNEGELGQYISEYFGDYRPLDPFTSPFQLCFYNQTPTAFTLALRMGLRRTESLMRWVWEANRGNPVDENATLTFGPDGNLVLARSNGQVAWQTSTANKGVVGLKILPNGNMVLYDSKGKFLWQSFDTPTDTLLVGQSLKMGAVTKLVSRASPGENVNGPYSLVMEPKGLHLYYKPTTSP 213          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 61/161 (37.89%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  208 FQLGFYNTTPNAYTLALRW--GIQRNEPLYR-WVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSN---KGVVGFKLLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLLLYY 648
            F+LGF+ TT ++     RW  GI   +  YR +VW ANR  P+  +      +  NLVL + +   VW +N +    +  V  +LL NGN V+ DS  N    F+WQSFDYPTDTLL    +G  L+ G    L S  S  +   G YS+ +E  RL  +Y
Sbjct:   56 FELGFFKTTSSS-----RWYLGIWYKKFPYRTYVWVANRDNPLSNDIGTLKISGNNLVLLDHSNKSVWSTNVTRGNERSPVVAELLDNGNFVMRDSNSNNASQFLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDYSYKLELRRLPEFY 211          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  208 FQLGFYNTTPNAYTLALRWG-----IQRNEPLYRWVWEANRGKPVR-ENATFSLGTDGNLVLAEANGTVVWQSNTSN-KGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLV 570
            F  GFY    +A+T ++ +         N+ +   VW AN  +PV    +  +L  DGN+VL + +G  VW+++ +N  GV   +LL  GN+V+ DS GN +WQSFD PTDT L  Q   +   T+LV
Sbjct:   55 FSSGFYEVYTHAFTFSVWYSKTEAAAANNKTI---VWSANPDRPVHARRSALTLQKDGNMVLTDYDGAAVWRADGNNFTGVQRARLLDTGNLVIEDSGGNTVWQSFDSPTDTFLPTQ--LITAATRLV 177          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  211 QLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGT----DGNLVLAEANGTVVWQSNTSN---KGVVGFKLLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLLLYY 648
            +LGF+ T  ++      W  + +E  Y  VW ANR  P+    + S+GT    + NLVL + +   +W +N +    +  V  +LL NGN VL DS  N    F+WQSFDYPTDTLL    +G  LR G    L S  S  +   G +S+ +++ RL  +Y
Sbjct:   56 ELGFFRTPSSSRWYLGMWYKKLSERTY--VWVANRDNPL----SCSIGTLKISNMNLVLLDHSNKSLWSTNHTRGNERSPVVAELLANGNFVLRDSNKNDRSGFLWQSFDYPTDTLLPEMKLGYDLRTGLNRFLTSWRSSDDPSSGDFSYKLQTRRLPEFY 210          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  202 SPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGN-LVLAEANGTVVWQSNTSN---KGVVGFKLLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLLLYY 648
            S F++GF+ T    Y L + W  + ++  Y  VW ANR  P+  NA  +L   GN LVL + +   VW +N +    +  V  +LL NGN V+ DS  N    ++WQSFDYPTDTLL    +G +L+ G    L S  S  +   G +S+ +E+  L  +Y
Sbjct:   55 SIFEVGFFRTNSRWY-LGM-WYKKVSDRTY--VWVANRDNPL-SNAIGTLKISGNNLVLLDHSNKPVWWTNLTRGNERSPVVAELLANGNFVMRDSSNNDASEYLWQSFDYPTDTLLPEMKLGYNLKTGLNRFLTSWRSSDDPSSGNFSYKLETQSLPEFY 210          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 61/162 (37.65%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  208 FQLGFYNTTPNAYTLALRW--GIQRNEPLYR-WVWEANRGKPVRENATFSLGTDGN-LVLAEANGTVVWQSNTSNKGV---VGFKLLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLLLYY 648
            F+LGF+ T  ++     RW  GI   + L R +VW ANR  P+  NA  +L   GN LVL       VW +N +       V  +LL NGN V+ DS  N    ++WQSFDYPTDTLL    +G  L+ G    L S  S  +   G +S+ +E+  L  +Y
Sbjct:   56 FELGFFRTNSSS-----RWYLGIWYKKLLDRTYVWVANRDNPL-SNAIGTLKISGNNLVLLGHTNKSVWSTNLTRGNERLPVVAELLSNGNFVMRDSSNNDASEYLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDFSYKLETRSLPEFY 211          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  208 FQLGFYNTTP-NAYTLALRWGI----QRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKG--VVGFKLLPNGNMVLHDSK----GNFIWQSFDYPTDTLL----VGQSLRVGGVTK-LVSRLSIKENVDGPYSFVMESDRLL 639
            F+LGF+ TT  N+     RW +    +       +VW ANR   +  +      +  +LVL + + T VW +N +      V  +LL NGN VL DSK      F+WQSFDYP DTLL    +G++    G  K L S  S  +   G YSF++E++  L
Sbjct:   53 FELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWVANRDNALHNSMGTLKISHASLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTTALDRFMWQSFDYPVDTLLPEMKLGRNRNGSGNEKILTSWKSPTDPSSGDYSFILETEGFL 212          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  208 FQLGFYNTTP-NAYTLALRWGI----QRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKG--VVGFKLLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTK--LVSRLSIKENVDGPYSFVMESDRLL 639
            F+LGF+ TT  N+     RW +    +       +VW ANR   +  +      +  +LVL + + T VW +N +      V  +LL NGN VL DSK N    F+WQSFDYP DTLL    +G++L +G   +  L S  S  +   G +SF++E++  L
Sbjct:   53 FELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWVANRDNALHNSMGTLKISHASLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTNDLDRFMWQSFDYPVDTLLPEMKLGRNL-IGSENEKILTSWKSPTDPSSGDFSFILETEGFL 212          
BLAST of FC875541 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  208 FQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVREN-ATFSLGTDGNLVLAEANGTVVWQSNTSN---KGVVGFKLLPNGNMVLHDSKGN----FIWQSFDYPTDTLL----VGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLLLYY 648
            F+LGF+ T  ++      W  + ++  Y  VW ANR  P+  +  T  +  +    L  +N +V W +N +    +  V   +L NGN V+ DS  N    F+WQSFD+PTDTLL    +   L+ G    L SR S  +   G +S+ +E  RL  +Y
Sbjct:   53 FELGFFRTNSSSRWYLGIWYKKVSDRTY--VWVANRDNPLSSSIGTLKISGNNPCHLDHSNKSV-WSTNLTRGNERSPVVADVLANGNFVMRDSNNNDASGFLWQSFDFPTDTLLPEMKLSYDLKTGLNRFLTSRRSSDDPSSGDFSYKLEPRRLPEFY 208          
The following BLAST results are available for this feature:
BLAST of FC875541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EP1G_DAUCA1.415e-7169.68Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
SLSG3_BRAOL2.897e-1637.89S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
KPRO_MAIZE2.076e-1437.50Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
SLSG2_BRAOA6.041e-1436.02S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
SRK6_BRAOE1.346e-1336.65Putative serine/threonine-protein kinase receptor ... [more]
SLSG6_BRAOL1.758e-1337.65S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SLSG1_BRAOA3.315e-1235.00S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
SLSG0_BRAOA5.654e-1234.78S-locus-specific glycoprotein OS=Brassica oleracea... [more]
SLSG4_BRAOL9.645e-1232.70S-locus-specific glycoprotein S14 (Fragment) OS=Br... [more]
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Properties
Property NameValue
Genbank descriptionC31405A10EF CTVClemen1 Citrus clementina cDNA clone C31405A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875541 ID=FC875541; Name=FC875541; organism=Citrus clementina; type=EST; length=689bp
GATCGCATAACATTTAATTAAACTACCAAAATGTCATCTTCTTCAGCAAT
ATTCTCCCTCTTCTTCCTCTGTTCACTCATTTTCTCCATTGCTAATGCAC
AGGTTCCTGCCAATGAAAGGTTTAAGTTCGTGAATGAAGGAGAATTTGGT
CCATTCATTAATGAATATGATGCGGATTACAGAATGATCCGCATCTTCAA
TTCTCCGTTCCAGCTAGGCTTTTACAACACAACACCAAATGCTTACACCC
TAGCCCTCCGGTGGGGTATCCAAAGGAACGAGCCGCTTTACCGTTGGGTT
TGGGAAGCAAACCGCGGCAAACCGGTTCGCGAAAACGCCACCTTTTCTTT
GGGGACCGACGGGAATCTTGTCTTGGCCGAAGCAAATGGCACCGTCGTAT
GGCAATCCAACACTTCCAACAAAGGTGTTGTGGGGTTCAAGTTGCTCCCG
AATGGAAACATGGTGCTTCATGACTCAAAGGGTAACTTTATCTGGCAGAG
TTTTGATTATCCGACTGATACTCTATTGGTGGGCCAGTCTCTTCGCGTCG
GTGGGGTCACCAAGCTCGTGAGCAGACTTTCCATTAAAGAAAACGTTGAC
GGCCCTTACAGCTTTGTAATGGAGTCTGATAGATTGTTACTCTATTACAA
AGCAGCAATGCTCCCCGGCCTGTTGTTTACTTCACTTTC
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