FC875545

Overview
NameFC875545
Unique NameFC875545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875545 vs. ExPASy Swiss-Prot
Match: PPDE2_XENLA (PPPDE peptidase domain-containing protein 2 OS=Xenopus laevis GN=pppde2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  195 DMAEESHKVSLHVYDLSQGLARQLSMSFLGKAIGGIWHTGIVVYGNEYYFGG-GIQHDCVGATPYGKPLRVVELGETHVPKDVFEMYLEEISPR-YTAEKYSLLSHNCNNFSNEVAQFLVGKMIPEYILNLPNEVMSSPMGALVLPMIQNLESTMKAGAV 668
            + AE  H V L+VYD+S+GLAR+LS   LGK + GIWHT I+V+  E+++G  GI     G T  G+P  V+ELG T V +++F  YL  +    ++ E Y L  HNCN FSNEVAQFL GK IP YI  LP+EV+S+P+G  + P++ +++     G +
Sbjct:    2 ETAEGPHLVRLYVYDMSRGLARRLSPVMLGKQLEGIWHTSIIVFDEEFFYGREGITSCLPGRTMLGEPDSVMELGITEVTEEIFLEYLSSLGESGFSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITELPSEVLSTPLGQALRPLLDSVQIQPAGGNI 161          
BLAST of FC875545 vs. ExPASy Swiss-Prot
Match: PPDE2_HUMAN (PPPDE peptidase domain-containing protein 2 OS=Homo sapiens GN=PPPDE2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3
Query:  213 HKVSLHVYDLSQGLARQLSMSFLGKAIGGIWHTGIVVYGNEYYFG-GGIQHDCVGATPYGKPLRVVELGETHVPKDVFEMYLEEISPR-YTAEKYSLLSHNCNNFSNEVAQFLVGKMIPEYILNLPNEVMSSPMGALVLPMIQNLESTMKAGA 665
            + V L+VYDLS+GLAR+LS   LGK + GIWHT IVV+ +E++FG GGI     G T  G P  VV++G T V +++F  YL  +    +  E Y+L  HNCN FSNEVAQFL G+ IP YI +LP+EV+S+P G  + P++ +++     G+
Sbjct:    7 YPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPLLDSIQIQPPGGS 159          
BLAST of FC875545 vs. ExPASy Swiss-Prot
Match: PPDE2_RAT (PPPDE peptidase domain-containing protein 2 OS=Rattus norvegicus GN=Pppde2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.916e-33
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  213 HKVSLHVYDLSQGLARQLSMSFLGKAIGGIWHTGIVVYGNEYYFGG-GIQHDCVGATPYGKPLRVVELGETHVPKDVFEMYLEEISPR-YTAEKYSLLSHNCNNFSNEVAQFLVGKMIPEYILNLPNEVMSSPMGALVLPMIQNLE 644
            + V L+VYDLS+GLAR+LS   LGK + GIWHT IVV+ +E++FG  GI     G T  G P  VV++G T V +++F  YL  +    +  E Y+L  HNCN FSNEVAQFL G+ IP YI +LP+EV+S+P G  + P + +++
Sbjct:    7 YPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDSIQ 152          
BLAST of FC875545 vs. ExPASy Swiss-Prot
Match: PPDE2_MOUSE (PPPDE peptidase domain-containing protein 2 OS=Mus musculus GN=Pppde2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.916e-33
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  213 HKVSLHVYDLSQGLARQLSMSFLGKAIGGIWHTGIVVYGNEYYFGG-GIQHDCVGATPYGKPLRVVELGETHVPKDVFEMYLEEISPR-YTAEKYSLLSHNCNNFSNEVAQFLVGKMIPEYILNLPNEVMSSPMGALVLPMIQNLE 644
            + V L+VYDLS+GLAR+LS   LGK + GIWHT IVV+ +E++FG  GI     G T  G P  VV++G T V +++F  YL  +    +  E Y+L  HNCN FSNEVAQFL G+ IP YI +LP+EV+S+P G  + P + +++
Sbjct:    7 YPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDSIQ 152          
The following BLAST results are available for this feature:
BLAST of FC875545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPDE2_XENLA3.214e-3445.63PPPDE peptidase domain-containing protein 2 OS=Xen... [more]
PPDE2_HUMAN1.221e-3347.06PPPDE peptidase domain-containing protein 2 OS=Hom... [more]
PPDE2_RAT7.916e-3347.95PPPDE peptidase domain-containing protein 2 OS=Rat... [more]
PPDE2_MOUSE7.916e-3347.95PPPDE peptidase domain-containing protein 2 OS=Mus... [more]
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Properties
Property NameValue
Genbank descriptionC31405B02EF CTVClemen1 Citrus clementina cDNA clone C31405B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875545 ID=FC875545; Name=FC875545; organism=Citrus clementina; type=EST; length=704bp
GATTTTCAGCGGTTAGAGGTTTCTCTCTTCCCTAAATTGACTGAGAAAAG
AAAAAAAAAAAAGGAAAAATACAACTCNTTCTTCGTCTTCTTCTCAGGTT
TCATTGTGATTTGGAAGGGCATCTTGCTGGGTTTCATTGGAAATTTTACA
GTGCTTAGTATTTCACGGTGCAAAACTTTTCGTATTAGACTGCAGATATG
GCTGAGGAGAGTCACAAGGTTTCCTTGCATGTTTATGATCTAAGCCAAGG
ACTAGCCCGACAACTTTCTATGTCATTCCTGGGGAAGGCTATTGGGGGAA
TATGGCACACAGGAATTGTGGTCTATGGTAATGAATATTATTTTGGGGGT
GGTATACAACATGATTGTGTTGGAGCAACACCGTATGGAAAACCATTGAG
GGTGGTAGAATTGGGTGAAACACATGTGCCAAAGGATGTGTTTGAAATGT
ATCTAGAAGAAATTAGCCCTCGTTATACTGCAGAAAAATATAGTCTGCTA
TCTCACAATTGCAACAACTTTAGCAATGAGGTTGCACAATTTTTGGTGGG
AAAAATGATCCCTGAGTATATTTTGAATCTTCCTAATGAAGTTATGAGCA
GTCCAATGGGTGCGCTTGTATTGCCCATGATACAGAACCTGGAATCAACA
ATGAAAGCAGGTGCGGTACCTCAAGCTCCTCAGTTCAGGCCTGCTCCACT
GGCT
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