FC875547

Overview
NameFC875547
Unique NameFC875547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875547_ssr24 microsatellite FC875547_ssr24:24..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3288 contig Ccv1_Contig3288:238..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 98/153 (64.05%), Postives = 126/153 (82.35%), Query Frame = 3
Query:  231 RRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            R  GA G +M A+ A SYA AL D+AK+N TLE T+AD+EKIEKI  ++ +  FFV+P +  EKKRE+VDEI  SS++QP   NFLNIL+D KRV+++K+IVKEFE+VYN +T+TE+AVV+SVVKLES+HLAQIAK VQ+LTG+KNVRIKTV+
Sbjct:   52 RGGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQIAKGVQRLTGSKNVRIKTVI 204          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 100/193 (51.81%), Postives = 138/193 (71.50%), Query Frame = 3
Query:  126 VSLQQTATLSLQSNLFPSGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            +S   T +     +L  S   A+ NPL   I +  +     R GA G RM  + A+ YA AL D+A    TLE+T++DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI  +S LQP T NF+NILID++R+++VK+I+ EFE+V+NK+T TE+AVV+SVVKLE++HLAQIAK VQK+TGAKNVRIKTV+
Sbjct:   21 LSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.512e-44
Identity = 96/189 (50.79%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  132 LQQTATLSLQSNLFPSGRAASRNPLSATIPSGPRRR---GAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            L +   L+L S+ F S +      L   +P    RR   GA G RMS+  A SYA AL DLA +NNTL++ +AD +KIE++FS+ ++ ++F +P ++   KR+++ E   +S  QP T NFLN+LID+KR+D++ DI+KEFE VYN +T+TE+ VV+SVVKLES HLAQIAKQVQKLTGAK VR KT++
Sbjct:   23 LTRKPILNLSSSTFYSPKLK----LKLKLPLTKTRRSTGGALGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTGAKKVRTKTLL 207          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.791e-37
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  144 ATLSLQSNLFPSG-RAASRNPLSATIPS----GPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            A  S  S   P+  R+AS    +  +PS     PRRRG      +   A SYA AL ++A  N TLE T +D+EK++KIF+++ + EFF NPT+  E+K  ++DEI KS  LQP   NF+N+++D  R  ++ +IV EFE ++N +T TE+A V+SVV+LES+ LAQIA+ VQK+TGAKNVR+KT
Sbjct:   17 AAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQDLAQIAQHVQKMTGAKNVRLKT 201          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_CHLRE (ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 55/141 (39.01%), Postives = 94/141 (66.67%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            V+ SYA ALV+LA     LE+  ADV+ +  +  E  ++    +NP ++ +KKR ++ +I K +  Q  T N+LN+L++  R+ +V +I + FE++Y +MT+T++A + S VKLE E    IAK++Q+LTG+KN+++K V+
Sbjct:   38 VSESYAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAKKLQELTGSKNIKLKPVI 178          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_MICAN (ATP synthase subunit delta OS=Microcystis aeruginosa (strain NIES-843) GN=atpH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 42/146 (28.77%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  249 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKI-EKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKT 683
            G  +S+ +A  YA AL+ +A+++  LE+   +++ + E + +   +  F  NP I  E K+ ++ ++  SSA  P   NF+ +L+D +R+  ++ + +++  +   +TNT +A VSS  +L       +  +V+ LTGA  V +KT
Sbjct:    3 GSLISSEIAEPYAQALLSVAQSSGQLEAIGGEIKSLLELLENAPDLRAFIGNPVIKEEAKKAVLSQVMGSSA-NPYLTNFMMLLVDKRRIQFLEPVCQQYLTLARVLTNTVLAEVSSATELNDSQKQIVIDKVKTLTGANVVELKT 147          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_CYAP7 (ATP synthase subunit delta OS=Cyanothece sp. (strain PCC 7424) GN=atpH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 40/145 (27.59%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  249 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIK 680
            G  +S  +A  YA AL+ ++++NN  E    D+  +  + +   ++ EF  NP I  E K+E++  I       P   NFL +L+D +R+  ++ + +++  +  ++TNT +A V S  +L  E    +  +V+ ++GA+ V +K
Sbjct:    3 GSSLSLEIAEPYAQALMSVSQSNNLTERFGEDIRSLLDLLNNSPELREFLSNPVIREENKKEILQRIMGDQT-HPYLRNFLMLLVDKRRIAFLEQVCEQYLALLRQLTNTVLAEVVSATELNDEQRQSVIDKVKTISGAQAVELK 146          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACWK (ATP synthase subunit delta OS=Bacillus weihenstephanensis (strain KBAB4) GN=atpH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ +F++  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ +I  E+  + N+  N   A V S+  L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVFTKNGELHSFLTQPNISKEQKKTFLANVFASVSESIL--NTLYILIDNKRIDILPEIANEYVVLANEERNVADATVYSIRLLSEEEKLNIAEAFAKKTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACHK (ATP synthase subunit delta OS=Bacillus thuringiensis subsp. konkukian GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
BLAST of FC875547 vs. ExPASy Swiss-Prot
Match: ATPD_BACCZ (ATP synthase subunit delta OS=Bacillus cereus (strain ZK / E33L) GN=atpH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  270 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVM 689
            VA  YA+AL  +AK  + LE    ++  ++ ++ +  ++H F   P I  E+K+  +  +  S +   L  N L ILID KR+D++ DI  E+  + N+  N   A V S   L  E    IA+   K TG   +R+K V+
Sbjct:    6 VAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFLANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEEEKLNIAEAFAKRTGKDAIRVKNVV 144          
The following BLAST results are available for this feature:
BLAST of FC875547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ATPD_TOBAC7.749e-4964.05ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_SPIOL1.237e-4651.81ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_PEA1.512e-4450.79ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
ATPD_SORBI1.791e-3747.03ATP synthase delta chain, chloroplastic OS=Sorghum... [more]
ATPD_CHLRE5.592e-2339.01ATP synthase delta chain, chloroplastic OS=Chlamyd... [more]
ATPD_MICAN5.246e-1328.77ATP synthase subunit delta OS=Microcystis aerugino... [more]
ATPD_CYAP75.246e-1327.59ATP synthase subunit delta OS=Cyanothece sp. (stra... [more]
ATPD_BACWK5.246e-1331.91ATP synthase subunit delta OS=Bacillus weihensteph... [more]
ATPD_BACHK1.169e-1231.91ATP synthase subunit delta OS=Bacillus thuringiens... [more]
ATPD_BACCZ1.169e-1231.91ATP synthase subunit delta OS=Bacillus cereus (str... [more]

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Properties
Property NameValue
Genbank descriptionC31405B04EF CTVClemen1 Citrus clementina cDNA clone C31405B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875547 ID=FC875547; Name=FC875547; organism=Citrus clementina; type=EST; length=699bp
GAATCAATCCGTTCTTTGATTGACTCTCTCTCTCTCTGGCTCTTTCTCTG
TGTGCAGCAGAAGCAGCAGCCTCAGCCTCAGCCGCTGCCTCAGCATCAGC
ATCGGCGTTCTCATCGCGAAAAATGGTGTCTCTTCAGCAAACCGCAACCC
TCTCACTCCAATCAAACCTCTTCCCCTCCGGCCGCGCGGCCTCTCGAAAC
CCATTATCCGCCACCATCCCCTCCGGCCCACGCCGGCGCGGCGCCCACGG
AATCAGAATGTCAGCCACAGTGGCGACCAGCTACGCCATCGCGCTGGTGG
ACTTGGCGAAAGCGAACAACACCCTCGAGTCCACGAGCGCCGACGTGGAA
AAGATCGAGAAAATCTTCAGCGAGAAACAAATCCATGAGTTCTTCGTGAA
CCCCACCATCGATATCGAGAAGAAAAGAGAGATGGTGGACGAGATATGCA
AGTCGTCGGCGCTGCAGCCGCTGACCGGGAATTTCTTGAACATACTGATC
GACGCGAAGAGGGTGGACGTGGTGAAGGACATAGTGAAGGAGTTCGAGGA
GGTGTATAATAAGATGACGAATACGGAGATGGCGGTGGTGAGCTCGGTGG
TGAAGCTGGAGTCGGAGCATTTGGCTCAGATAGCGAAGCAAGTCCAGAAG
TTGACTGGGGCCAAGAATGTGAGGATAAAGACCGTGATGACCCGAGCTT
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