FC875551

Overview
NameFC875551
Unique NameFC875551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875551_ssr173 microsatellite FC875551_ssr173:173..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10258 contig Ccv1_Contig10258:1..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875551 vs. ExPASy Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  231 MKFRNYVPHDKQLQEGKVTPPELP-----KFEDPVAAAPPQSEKKEDPFVNIAPKKPNWDLRRDVQKKLDKLESRTQKAMFTLMQQQEK 482
            ++ RNYVP D+ L+  +V P   P     K ++ + AA P+   +E    N+AP+KP+WDL+RDV KKL+KLE RTQ+A+  L++++ K
Sbjct:   57 LRLRNYVPEDEDLKRRRV-PQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLEKRTQRAIAELIRERLK 144
[Close]
BLAST of FC875551 vs. ExPASy Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 3 
Query:  231 MKFRNYVPHDKQLQEGKVTPPELP-----KFEDPVAAAPPQSEKKEDPFVNIAPKKPNWDLRRDVQKKLDKLESRTQKAMFTLMQQQEK 482
            ++ RNYVP D+ L++ +V P   P     K ++ + AA P+   +E    N+AP+KP+WDL+RDV KKL+KL+ RTQ+A+  L++++ K
Sbjct:   57 LRLRNYVPEDEDLKKRRV-PQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLKKRTQRAIAELIRERLK 144
The following BLAST results are available for this feature:
BLAST of FC875551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCD12_MOUSE4.299e-1342.70Coiled-coil domain-containing protein 12 OS=Mus mu... [more]
CCD12_HUMAN9.578e-1341.57Coiled-coil domain-containing protein 12 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionC31405B09EF CTVClemen1 Citrus clementina cDNA clone C31405B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875551 ID=FC875551; Name=FC875551; organism=Citrus clementina; type=EST; length=495bp
GAGGGCTTGCTCGGTATGGTGAATTTGATTTGATGGGTACTGAAGAAGAA
GTCTCAGTCGAGCAAGCGGCTGCGGCGCGGCGAGAGAGGCTCAAGGCTTT
GAGAGCTGCTCAGGAACTGCTAAGCGCCGGGGACGATGACTCCGGTCAGG
CTGATGATAATAATAAGGCCACTGATGATGATGATGATGATGATAATGAT
AACGAAGATGCTGAAGATATTAATCTCAGCATGAAATTTAGAAATTATGT
TCCTCATGATAAGCAGCTTCAGGAAGGTAAGGTCACTCCGCCAGAACTAC
CAAAGTTCGAGGACCCAGTTGCAGCTGCACCTCCACAATCAGAAAAGAAA
GAGGATCCATTTGTGAACATTGCTCCGAAGAAACCCAACTGGGACCTGCG
AAGGGATGTGCAAAAGAAGCTTGATAAGCTTGAAAGCCGCACGCAAAAGG
CAATGTTTACACTTATGCAGCAACAAGAAAAGGAAAAGCTGACGG
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