FC875561

Overview
NameFC875561
Unique NameFC875561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.537e-94
Identity = 167/217 (76.96%), Postives = 189/217 (87.10%), Query Frame = 3
Query:   66 LDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKDALD 716
            L+DLI+K GGCAV+DGGFATQLE HGA+INDPLWSA+ LIK P L+KRVH+EYLEAGADI+VTSSYQATIPGFLSRGLSIEE+ESLL+KSV LAVEARD+FW+ V KV GH+YNRALVAASIGSYGAYLADGSEYSG+YG  V L+KLKDFHRRRLQVLVE+GPDLLAFETIPNK              +QIP+WICF+SVDGE APSGESF++ L+
Sbjct:   10 LEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLE 226          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.016e-80
Identity = 146/218 (66.97%), Postives = 170/218 (77.98%), Query Frame = 3
Query:   66 LDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKDALDI 719
            L+DL+ +AGGCAVIDGGFATQLE  GA INDPLWSA  LI +PHLVK VH++YLEAGAD++++SSYQATIPGF++RG+S+ EAE LL  SV LA EARD+FW +  +     YNRALVAASIGSYGAYLADGSEYSG+YG  +  EKLKDFHRRRLQVL  +GPDL+AFE IPN+              +QIPSWICFSSVDG+N  SGESF D L I
Sbjct:    4 LEDLVARAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGADVIISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKI 221          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.882e-65
Identity = 128/231 (55.41%), Postives = 160/231 (69.26%), Query Frame = 3
Query:   60 SSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWD-----------AVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKDALDI 719
            +S+ D +++ GG AVIDGG AT+ E HGA +NDPLWSA  L+  PHL+  VHL+YLEAGADI+ ++SYQATI GF ++G S EE+ESLL+KSV +A EAR+ ++D            +KK P       LVAAS+GSYGAYLADGSEYSG YG  + LEKLKDFHRRRLQVL ESG DL+AFETIPNK             +++IP W  F+S DG N  SG+S K+ + I
Sbjct:    7 NSMKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRP------ILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISI 231          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 7.049e-64
Identity = 125/222 (56.31%), Postives = 158/222 (71.17%), Query Frame = 3
Query:   54 TASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKK------VPGHNYNR-ALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGES 698
            T+S + D +EK GG AV+DGGFAT+L+ HGA INDPLWSA  LI  PHLV +VHL+YLE+GA+I++T+SYQATI GF+++GLS+ EAE+LL +SV +  EAR+ F++   K        G    R  LVAAS+GSYGAYLADGSEYSG YG  V  E LKDFHRRR+Q+L +SG DL+AFETIPNK             +I IP+W  F+S DG + P G+S
Sbjct:    9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDS 230          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.585e-61
Identity = 118/214 (55.14%), Postives = 153/214 (71.50%), Query Frame = 3
Query:   78 IEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKDALDI 719
            ++ AGG  V+DGG AT+LE +GA +NDPLWSA  L+  PHL+++VH++YLEAGA+I++T+SYQATI GF S+G S E++E+LL KSV +A+EAR+ F     +      +  LVAA++GSYGAYLADGSEYSG+YG     E LKDFHRRRLQVL E+GPDL+AFETIPNK             NI IPSW+ F+S DG +  SG+S  +   I
Sbjct:   17 VDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPIQHPILVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATI 230          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.295e-61
Identity = 121/227 (53.30%), Postives = 157/227 (69.16%), Query Frame = 3
Query:   51 TTASSLDDLIEK----AGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKDALDI 719
            T A S ++ + +    AGG  V+DGG AT+LE +GA +NDPLWSA  L+  PHL+++VH++YLEAGA+I++T+SYQATI GF S+G S E++E+LL KSV +A+EAR+ F     +      +  LVAAS+GSYGAYLADGSEYSG+YG     E LKDFHRRRLQVL E+GPDL+AFETIPNK             NI IP+W  F+S DG +  SG+S  +   I
Sbjct:    4 TAAGSAEEAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQHPVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTI 230          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.244e-60
Identity = 117/217 (53.92%), Postives = 149/217 (68.66%), Query Frame = 3
Query:   57 ASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKD 707
            A +L   + +AGGCAV+DGG  T+LE HGA ++D LWSA  L   PHL+++VHL+YLEAGAD+++++SYQATI GF SRG S +E+E LL +SV +A EAR  F     +        ALVAAS+GSYGAY ADGSEYSG+YG  +  E LK+FHRRRLQVL  +GPDL+AFETIPNK              I+IP+W  F+S DG NA SG+   +
Sbjct:   11 AGALRGFVREAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGADVIISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINE 227          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.388e-58
Identity = 111/222 (50.00%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   66 LDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRA--------LVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKD 707
            + D + +AG  AVI GG  T+L+ HGA +NDPLWSA  L+  PHL+++VHL+YLE GADI++T+SYQATI GF ++G S EE E+LL +SV +A EARD ++    +    N + +        L+A S+GSYGAYLADGSE+SGNYG  +  E LKDFHRR++Q+L +SG DLLAFE +PNK             NI  P+W  F+S DG N  SG+S ++
Sbjct:    6 ITDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEE 227          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.905e-42
Identity = 92/202 (45.54%), Postives = 127/202 (62.87%), Query Frame = 3
Query:  102 VIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKD 707
            V+DG  AT+LE  G ++ND LWSA  L+++P L+K+VH +Y  AGAD  +T+SYQ+T  GF +RGLS  EA  L+E SV++A EARD+FW   +     N  + ++AASIG YGAYLADGSEY GNY   +  ++L +FHR R++ L+E+G D+LA ETIP                 +  +WI FS+ DG +   G    D
Sbjct:   15 VLDGAMATELERKGCNLNDSLWSAKILMEEPELIKQVHTDYFAAGADCAITASYQSTFEGFAARGLSEAEARRLIELSVSIAAEARDEFWSLEEN--RLNRPKPIIAASIGPYGAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLLKEFP-ETYAWISFSAKDGLHISDGTPAAD 211          
BLAST of FC875561 vs. ExPASy Swiss-Prot
Match: MMUM_ECOLI (Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 81/204 (39.71%), Postives = 117/204 (57.35%), Query Frame = 3
Query:  102 VIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKDAL 713
            ++DG  AT+LE  G ++ D LWSA  L++ P L++ VHL+Y  AGA   +T+SYQAT  GF +RGL   ++++L+ KSV LA +AR+ +               LVA S+G YGAYLADGSEY G+Y   V  E  + FHR R++ L+++G DLLA ET+PN                +  +W  F+  D E+   G   +D +
Sbjct:   18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAARGLDEAQSKALIGKSVELARKAREAY-----LAENPQAGTLLVAGSVGPYGAYLADGSEYRGDYHCSV--EAFQAFHRPRVEALLDAGADLLACETLPN-FSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVV 213          
The following BLAST results are available for this feature:
BLAST of FC875561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HMT1_ARATH6.537e-9476.96Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT1_MAIZE7.016e-8066.97Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT2_ARATH4.882e-6555.41Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
HMT3_ARATH7.049e-6456.31Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
HMT3_MAIZE5.585e-6155.14Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
HMT2_MAIZE7.295e-6153.30Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
HMT4_MAIZE1.244e-6053.92Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
SMTA_ASTBI3.388e-5850.00Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT_BACSU9.905e-4245.54Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
MMUM_ECOLI4.456e-3439.71Homocysteine S-methyltransferase OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionC31405C08EF CTVClemen1 Citrus clementina cDNA clone C31405C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875561 ID=FC875561; Name=FC875561; organism=Citrus clementina; type=EST; length=732bp
GGTTGGTGAGCGTAAATCTAGAGACTTTTCTGAATATGGGCAAGGAAAAC
ACCACGGCGTCGTCTTTGGATGATCTAATTGAGAAAGCCGGCGGCTGTGC
TGTCATTGATGGAGGCTTCGCTACCCAGCTTGAGACTCACGGCGCCTCCA
TTAACGACCCTCTTTGGAGCGCGCTTTATTTGATCAAACAACCCCACCTC
GTCAAGCGGGTTCATTTGGAATACCTGGAGGCCGGTGCTGATATTTTGGT
CACTTCATCCTACCAGGCCACCATTCCAGGGTTTCTTTCCAGGGGATTGT
CAATCGAAGAAGCGGAATCGTTACTAGAGAAGAGCGTTACATTGGCTGTT
GAAGCCCGAGACAAGTTCTGGGATGCTGTAAAGAAGGTTCCGGGGCATAA
CTACAACCGAGCATTGGTTGCAGCTTCAATCGGAAGCTACGGAGCTTATC
TTGCCGATGGTTCTGAGTATAGTGGAAATTACGGACCTGGGGTAGATCTG
GAGAAGCTGAAAGATTTCCACCGGCGCAGATTGCAAGTCCTTGTCGAATC
AGGTCCAGATTTGCTTGCTTTTGAAACCATCCCCAATAAACTCGAGGCTC
AGGCATTGGTAGAGCTGCTGGAGGAAGAGAACATCCAAATCCCATCTTGG
ATCTGCTTCAGTTCCGTAGATGGTGAGAACGCCCCATCAGGAGAGAGCTT
TAAGGATGCCCTTGATATATAACAAGAGCGGC
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