FC875562

Overview
NameFC875562
Unique NameFC875562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875562_ssr262 microsatellite FC875562_ssr262:262..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10262 contig Ccv1_Contig10262:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875562 vs. ExPASy Swiss-Prot
Match: YUID_BACSU (Uncharacterized membrane protein yuiD OS=Bacillus subtilis GN=yuiD PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:  367 KRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC----------EFPPDHPLSSVRPLRELLGHTPLQVVAGGILGCVVAFLM 702
            ++ D   +  +GGMPSSHSA V+AL+  + L+ G  S  FA++ + A I M+DA+GVR HAG QA ++N++V           +FP        + L+ELLGH P++V  GG+ G ++  ++
Sbjct:   32 RKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVL 153
The following BLAST results are available for this feature:
BLAST of FC875562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YUID_BACSU2.625e-1837.70Uncharacterized membrane protein yuiD OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionC31405C09EF CTVClemen1 Citrus clementina cDNA clone C31405C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875562 ID=FC875562; Name=FC875562; organism=Citrus clementina; type=EST; length=729bp
GGTTGCGTCATTCACTCCTCGTTAGAGAGAGAAAGAGGAGAGGGAGGTGG
TGTGATTGTGGTTGTGTTTGTGGTCGTGGTCGTGGTTGTGGTTGTGCGAA
CTGTAAATTTTGAACTGTTGGGGATCGTCTCATCCAATAATTTTGGTGAA
GAGAAAGCGGAAAATTAAAAAAAAATTAAAATAATGGATGAGGTGATTAC
AGTAGGAGATGCGGCGTCGTTTAGGAGTGGTCAAGCGACGTCCTTTTTGG
ATTCTCCTCCATCGTCGTCGTCGCTGTTCTTCCCTAACAACCTCCCTCTG
ATCTCCGCATTTCTCGCCTTTGCTCTTGCTCAATTCCTCAAGATCTTCAC
CACTTGGTATAAAGAAAAGAGATGGGATTCTAAAAAGATGCTTGACTCTG
GTGGAATGCCTTCGTCACATTCTGCTACTGTGTCGGCTCTAGCAGTAGCT
ATTGGTCTGCAAGAAGGGTCAGGAAGTCCATCTTTTGCCATTGCAGTGGT
CTTGGCTTGCATTGTAATGTATGATGCCTCTGGGGTCAGACTACATGCTG
GTCGGCAAGCTGAATTGCTGAATCAAATAGTATGTGAGTTTCCTCCAGAC
CACCCATTGTCTAGCGTTAGACCTCTACGTGAATTACTTGGTCATACCCC
GTTACAGGTTGTGGCCGGTGGTATTTTGGGATGCGTTGTAGCGTTTCTGA
TGAGAACTCGAACTAGATCATTACAGATC
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