FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.169e-41
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            ++K+ KR RD  KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAALSIKG +AILNFP+LA S PRP S SPRD+Q AA KAA ME
Sbjct:   35 SEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHME 135          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.504e-40
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 2
Query:  272 KKQKKRP-RDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            +++KK+P +D  KHPVYRGVR R WGKWVSEIREPRKKSRIWLGTF +PEMAARAHDVAALSIKGASAILNFP LAGS PRP+S SPRD+Q AA KAA ME
Sbjct:   20 EEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHME 120          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 2
Query:  281 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            KKR R D   P YRGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD AAL+IKG SA+LNFP+LA  LPRPAS SPRDVQAAAA AA+M+
Sbjct:   34 KKRVRSD---PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMD 127          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.009e-36
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 2
Query:  272 KKQKKRPRDD------SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFD 580
            K +KKR +DD      SKHP +RGVRMR WGKWVSEIREP+KKSRIWLGTFST EMAARAHDVAAL+IKG SA LNFP+LA  LPRPAS  P+D+QAAAA AA+    D
Sbjct:   24 KPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAID 132          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.247e-36
Identity = 74/102 (72.55%), Postives = 84/102 (82.35%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            A     K  ++++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF T EMA RAHDVAA+SIKG SAILNFP+L+  LPRP S SPRDV+AAA KAA M+
Sbjct:    2 ADSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMD 103          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 2
Query:  281 KKRPRDDS--------KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEI 574
            +KR RD S        +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF T +MAARAHDVAAL+IKG+SA+LNFP+LA   PRPAS SP D+Q AAA+AA+M +
Sbjct:   59 RKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVV 164          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.540e-36
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 2
Query:  278 QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 562
            ++++     KHP YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+IKG +A LNFPKLAG LPRP + SP+D+QAAA+ AA
Sbjct:   87 KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAA 181          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            + K K   +  SK P +RGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAL+IKG SA LNFP+LA  LPRPAS  P+D+Q AAA AA+++
Sbjct:   24 SSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVD 124          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.245e-35
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPV-YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 562
            K++K    DD+K+P  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+IKG S  LNFP+L+G LPRP S SP+D+QAAA KAA
Sbjct:   55 KRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAA 152          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            ++KK+K++ ++     VYRG RMR+WGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAALSIKG+SAILNFP+LA  LPRP S S +D+QAAAA+AA M+
Sbjct:   12 SSKKKKEKTKEKG---VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMD 110          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DREB3_ARATH5.169e-4180.20Dehydration-responsive element-binding protein 3 O... [more]
TINY_ARATH1.504e-4080.20Ethylene-responsive transcription factor TINY OS=A... [more]
ERF37_ARATH1.192e-3781.44Ethylene-responsive transcription factor ERF037 OS... [more]
ERF38_ARATH1.009e-3671.56Ethylene-responsive transcription factor ERF038 OS... [more]
ERF43_ARATH2.247e-3672.55Ethylene-responsive transcription factor ERF043 OS... [more]
ERF36_ARATH6.539e-3668.87Ethylene-responsive transcription factor ERF036 OS... [more]
ERF34_ARATH8.540e-3672.63Ethylene-responsive transcription factor ERF034 OS... [more]
ERF39_ARATH1.457e-3572.28Ethylene-responsive transcription factor ERF039 OS... [more]
ERF35_ARATH3.245e-3573.47Ethylene-responsive transcription factor ERF035 OS... [more]
ERF42_ARATH1.233e-3471.57Ethylene-responsive transcription factor ERF042 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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