FC875565

Overview
NameFC875565
Unique NameFC875565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10263 contig Ccv1_Contig10263:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +IINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +IINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:   36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +II DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:   36 KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            ++I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   38 KVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            ++I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   38 KVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC875565 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  456 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +II DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:   17 KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of FC875565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GRP1_DAUCA4.858e-1993.75Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL3.149e-1889.58Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SINAL3.149e-1889.58Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH7.015e-1887.50Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP10_BRANA2.947e-1683.33Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH8.575e-1683.33Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP_HORVU7.259e-1579.17Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SORBI2.112e-1477.08Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRPA_MAIZE2.758e-1477.08Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_SORBI6.145e-1479.17Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC31405C12EF CTVClemen1 Citrus clementina cDNA clone C31405C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875565 ID=FC875565; Name=FC875565; organism=Citrus clementina; type=EST; length=696bp
GGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTA
GTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCG
GTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATG
AGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGGTCCGTTTGAAC
CAGATCCGACCCGATCCACGATTCGGCTTGTTCTGATCTGTGATTCGTGT
GCTCTGTGATCTGTTTCTGTTACTCTGTTACTGTTCTCTGTTACTACTGT
TACTCTATTATTACTATGCCTAAATCGGTACGTTCATCTTCATCTTTTTA
TTAAGACGAAGGGCCCGATCGGATTTATTATTATTTTTATTGTTATTAAG
TTTCCAGATCTGAGATGAATTTGCTAAATTATTTTTTTGTTTATCCTCGT
TAATTCAGATTATTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGA
TTCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCAT
GAACGGCCAGAATCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGT
CCCGTGGAAGCGGTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGT
GGTGGATATGGAGGTGGTGGACGCCGTGAAAGTGGTGGTGGCGGTG
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