FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:498..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.088e-81
Identity = 153/218 (70.18%), Postives = 178/218 (81.65%), Query Frame = 2
Query:   68 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKA----TSPSNSGEDMGSTSTSSPESKNQGSVET----AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGS-CGSILDGLV 694
            M+QR+ PAPFL+KTYQLVDD +TDDVISWNE G TF+VWKTA+FAKDLLP YFKHNNFSSFVRQLNTYGFRKIV DKWEFANENF+RG +E LT IRRRKT T  S    GK+ A     SP NSG+D+GS+STSSP+SKN GSV+T    ++F DLSDEN KL++DN+ LSSEL QAKKQC+EL+ FL++YVKV PD INRIM QG+  GS L+ LV
Sbjct:    1 MSQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVT--STPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAPDMINRIMSQGTPSGSSLEELV 216          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.458e-68
Identity = 136/204 (66.67%), Postives = 158/204 (77.45%), Query Frame = 2
Query:   71 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGK-----TKATSPSNSGEDMGSTSTSSP-ESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQG 664
            AQRSVPAPFL KTYQLVDD STDDV+SWNE G  F+VWKTA+FAKDLLP YFKHNNFSSF+RQLNTYGFRK V DKWEFAN+ FRRG  + LT+IRRRK+     A TAGK     + + S S  G+D GS+STSSP  SKN GSVE    ADLS EN KL+R+N  LSSELA AKKQ DEL+TFLT ++KV P+QI++++  G
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVI---ASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVEN-MVADLSGENEKLKRENNNLSSELAAAKKQRDELVTFLTGHLKVRPEQIDKMIKGG 206          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.926e-52
Identity = 108/203 (53.20%), Postives = 135/203 (66.50%), Query Frame = 2
Query:   74 QRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRK-TATGQSAQTAG------------KTKATSPSNSGEDMGSTSTSSPE--------SKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 619
            QR+VP PFL KTYQLVDDP+ DDVISWN+ G+TF+VW+ A+FA+DLLP YFKHNNFSSFVRQLNTYGFRKIV D+WEFAN+ FRRG R  L EI RRK T    +A TA              T+  SP  SGE+   +S+SSPE            GS   A   D+ DEN +LRR+N  L+ EL+Q +K C+ ++  +++Y
Sbjct:   42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPAPAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGSGGVAS-GDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKY 243          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.245e-50
Identity = 103/203 (50.74%), Postives = 130/203 (64.04%), Query Frame = 2
Query:   62 ERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRK------TATGQSAQTAGKTKATSPSNSGEDMGSTS--TSSPESKNQGSVETAKFADLS----DENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGP 634
            E  +QRS+P PFL KT+ LV+D S DDVISWNE G++FIVW   DFAKDLLP +FKHNNFSSFVRQLNTYGF+K+V D+WEF+N+ F+RG +  L EI+RRK      T    S++   +T   SPSNSGED  +    +SSP S      +T     LS    +EN KLR  N  L+ EL Q K  CD + + ++ YV   P
Sbjct:   13 ESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQP 215          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.330e-48
Identity = 103/222 (46.40%), Postives = 135/222 (60.81%), Query Frame = 2
Query:   74 QRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKT---------------ATGQSAQTAGK--------------TKATSPSNSGED--MGSTSTSSPESKNQ---------GSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 619
            QRS+P PFL KTYQLV+DP+ DDVISWNE G+TF+VW+ A+FA+DLLP YFKHNNFSSFVRQLNTYGFRKIV D+WEFAN+ FRRG +  L +I RRK                AT  +A  +G               T+A SP++S E+  + S S S  E +           G   +A   D+ +EN +LRR+N  L+ EL   KK C+ ++  +++Y
Sbjct:   32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVAAAAAAPPPPSPGMATAAAAVASGAVTVAAAPIPMALPVTRAGSPAHSSEEQVLSSNSGSGEEHRQASGSGSAPGGGGGGSASGGDMGEENERLRRENARLTRELGHMKKLCNNILLLMSKY 253          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48
Identity = 93/184 (50.54%), Postives = 129/184 (70.11%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAG---KTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKV 628
            PAPFL KT Q+V++ +TD+VISW + G +F+VWK  +FA+DLLP +FKH NFSSFVRQLNTYGFRK+V D+WEFAN NFRRG +  L+ IRRRK  T QS+++ G         P        S +TSS   ++  S  +   AD++ EN +LR+DN+TL+ ELA+A++ C+EL+ FL+ ++ V
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATTPQSSKSCGSGVNVAFPPPLPPLPPEPSATTSSGNDRSSSSASSPPRADITSENEQLRKDNQTLTMELARARRHCEELLGFLSRFLDV 211          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.849e-46
Identity = 102/224 (45.54%), Postives = 130/224 (58.04%), Query Frame = 2
Query:   38 GGW*GANRERMAQ------RSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTA----------------------TGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            GG+ G   ER+        ++VPAPFL KTYQLVDDP+TD V+SW +   TF+VW+  +FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIV D+WEFANE F+RG +  L EI RRKT+                      +G S       + T+P         +  S P    Q     A+   LS++N +LRR N  L SELA  KK  +++I F+  +VK
Sbjct:   10 GGYGGGGGERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVK 233          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.414e-45
Identity = 98/228 (42.98%), Postives = 132/228 (57.89%), Query Frame = 2
Query:   71 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKA------------------TSPSNSGEDMGSTSTSSPES------------KNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQG 664
            +QRS+P PFL KTYQLV+DP  D++ISWNE G TFIVW+ A+FA+DLLP YFKHNNFSSFVRQLNTYGFRK+V D+WEF+N+ F+RG +  L +I+RRK +    A  A    A                   SPSNSGE+   +S SSP +              Q +       +L +EN +LR+DNE L  E+ + K     + T +  +   G +    ++ +G
Sbjct:   52 SQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVISSNSSPAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTP-GQEDCAHLLPEG 278          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 100/205 (48.78%), Postives = 128/205 (62.44%), Query Frame = 2
Query:   71 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGK------------TKATSPSNSGEDMGSTST--------SSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            A  + PAPFL KTYQLVDDPSTDDV+SW E  ATF+VW+  +FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIVAD+WEFANE FR+G +  L+EI RRK+++    Q                +  T+P +      + +         SSP     G  +    A LS++N +LRR N  L SELA  +K  +++I FL  +V+
Sbjct:   29 AVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDL--LAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVE 231          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 2
Query:   92 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTA--TGQSAQTAGKTK-----ATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 619
            PFL KTY +V+DPSTD+ ISWN+SG  F+VW+ A+FA+DLLP +FKH+NFSSFVRQLNTYGF+K+VAD+WEFAN+ FRRG +  L  I+RRK +   G  A  AG        ++ P++SG +   +S+    +    +  +   A+L +ENA+LRR+N  L+ ELA+A++ CD +   ++ Y
Sbjct:   10 PFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGAGAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGAAGIAAGVSGAVAELEEENARLRRENARLARELARARRVCDGVRRLVSRY 192          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSF24_SOLPE2.088e-8170.18Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH3.458e-6866.67Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB2B_ORYSJ5.926e-5253.20Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2A_ARATH7.245e-5050.74Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB2C_ORYSJ2.330e-4846.40Heat stress transcription factor B-2c OS=Oryza sat... [more]
HSFB1_ORYSJ5.192e-4850.54Heat stress transcription factor B-1 OS=Oryza sati... [more]
HSFB4_ARATH2.849e-4645.54Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB2B_ARATH1.414e-4542.98Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB4D_ORYSJ3.150e-4548.78Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB2A_ORYSJ5.940e-4448.09Heat stress transcription factor B-2a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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