FC875568

Overview
NameFC875568
Unique NameFC875568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:7..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.521e-65
Identity = 112/182 (61.54%), Postives = 136/182 (74.73%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY +CG  +  G +LLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI  +W+PS
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAI--GSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPS 248          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.024e-64
Identity = 111/182 (60.99%), Postives = 136/182 (74.73%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY  CG  +  G +LLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAI--GVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPS 263          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.980e-64
Identity = 114/201 (56.72%), Postives = 142/201 (70.65%), Query Frame = 2
Query:  116 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY + G+ +  G +L+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VIT  W PS
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAI--GVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPS 242          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.672e-64
Identity = 117/200 (58.50%), Postives = 142/200 (71.00%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +CG  +  G +LLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAI--GVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPS 252          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.133e-63
Identity = 118/202 (58.42%), Postives = 143/202 (70.79%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PS
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPS 252          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.932e-63
Identity = 113/178 (63.48%), Postives = 136/178 (76.40%), Query Frame = 2
Query:  182 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY  CGE L     LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+PS
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEAL--RVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPS 179          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.932e-63
Identity = 112/183 (61.20%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  167 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PS
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPS 257          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.523e-63
Identity = 118/205 (57.56%), Postives = 143/205 (69.76%), Query Frame = 2
Query:  116 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +CG  +  G +LLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAI--GVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPS 251          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.295e-63
Identity = 119/196 (60.71%), Postives = 143/196 (72.96%), Query Frame = 2
Query:  134 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYPC  GK Y+GRGP+QLTWNYNY +CG  +  G +LLNNPDLLATDP +SFKSA WFWMT Q PKPSCH+VI   W PS
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAI--GVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPS 249          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.341e-63
Identity = 113/199 (56.78%), Postives = 141/199 (70.85%), Query Frame = 2
Query:  119 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF  QT HETTGGW  AP G Y+WGYCF  EI   + YC  +  +PC    KY+GRGPIQL++NYNY   GE +  GE+LLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VIT +W PS
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAI--GEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPS 263          
The following BLAST results are available for this feature:
BLAST of FC875568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_BRANA3.521e-6561.54Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH1.024e-6460.99Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIB_VITVI2.980e-6456.72Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIT_PHAVU8.672e-6458.50Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_TOBAC1.133e-6358.42Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIT_CARPA1.932e-6363.48Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_TOBAC1.932e-6361.20Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI5_PHAVU2.523e-6357.56Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI1_THECC3.295e-6360.71Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI9_ORYSJ7.341e-6356.78Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31405D04EF CTVClemen1 Citrus clementina cDNA clone C31405D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875568 ID=FC875568; Name=FC875568; organism=Citrus clementina; type=EST; length=703bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCCAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
TCA
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