FC875574

Overview
NameFC875574
Unique NameFC875574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10872 contig Ccv1_Contig10872:32..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875574 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 72/149 (48.32%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESXXXXXXXXXXXXLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLR 660
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEES            ++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVL+
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLK 190          
BLAST of FC875574 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 74/155 (47.74%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  217 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESXXXXXXXXXXXXLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLR 660
            VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEES            +SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+L+
Sbjct:   29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLK 176          
BLAST of FC875574 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  214 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESXXXXXXXXXXXXLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLR 660
            +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEES            +S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++L+
Sbjct:   30 EVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLK 168          
The following BLAST results are available for this feature:
BLAST of FC875574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3126_ARATH2.973e-2748.32Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_SOLTU3.883e-2747.74Remorin OS=Solanum tuberosum PE=1 SV=1[more]
REMO_ARATH4.019e-2445.64Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31405D10EF CTVClemen1 Citrus clementina cDNA clone C31405D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875574 ID=FC875574; Name=FC875574; organism=Citrus clementina; type=EST; length=714bp
GGGAGCCCCACTGAGGGAACAGAGCCATATTGCACATTATTGAAAGAAAA
TATTGAGAAGCTAATCGCTTTGTCGTAGTGAGCTGTATACGCGAAGTCTC
TGTAGACGATAATGGCAGAGGAGCAAGTGAAGAAAGTAGAAGCTGAGACG
CCAGCGGCCCCAGCTCCAGCTCCAGCTCTTGCTCCAGCTCCGGCTCCGGC
TGTCCCCAACAACGACGTCGCGGAGGAGAAAGCTGTTACTCAATTACATG
ATCAAGAGAAGCCTGTTGATGACTCCAAAGCTCTCGCAGTAGTTGATCAA
ACTCCAGATTCGGCCAAAAAGAAAATTTCTGGGGAAAAGAAAATTTCTGG
ATCGCATGATAGAGATGTTGCTCTTGCAGAGGTCGAAAAGGAAAAGAGAG
AGTCTTTTATCAAGGCATGGGAAGAGAGTAAAAAAACAAAAGCAGAGAAT
AAGGCTCAGAAAAAGCTCTCAGCTGTTGCTGCATGGGAAAATAGCAAGAA
AGCATCTCTAGAAGCCAAACTGAAAAAGATTGAGGAACAACTGGAGAGGA
AGAAGGCAGAGTATGCTGAAAAAATGAAAAATAAGGTAGCTCTAGTTCAC
AAGGAAGCAGAAGAGAAAAGGGCAATGGTTGAAGCTAGACGGGGAGAAGA
CGTTCTTAGGCTGAAGAGATAGCTGCAAATATCGGGCTACTGGGACACTC
CAAAGAGCTCCTCG
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