FC875575

Overview
NameFC875575
Unique NameFC875575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10266 contig Ccv1_Contig10266:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875575 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 80/202 (39.60%), Postives = 105/202 (51.98%), Query Frame = 3 
Query:   36 GIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSXXXXXXXXXXXXXXNMG------LEMLMNMFGGLGA--------GSLAVPNRSDVPPEQLYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLL 599
            G+ G+   G E + G   D   + Q+L NP   QMMQ L+S+P  M Q++ +NPQLR M+DSN QLRE + NPEFL  +TNPE M  M+ LQQ + T                      MG           NMFGG+G          S   P  +  PPEQ +  QL QL+E+GF D   NI AL +T GN++ A++RLL
Sbjct:  325 GMGGMG--GMEGMLG--MDPERVQQLLNNPVAQQMMQRLMSDPAMMQQMITMNPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPGGMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPVNQEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINLAIDRLL 522
The following BLAST results are available for this feature:
BLAST of FC875575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBQL_DICDI1.011e-3039.60Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
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Properties
Property NameValue
Genbank descriptionC31405D11EF CTVClemen1 Citrus clementina cDNA clone C31405D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875575 ID=FC875575; Name=FC875575; organism=Citrus clementina; type=EST; length=726bp
GTTCTCTTGGGGATGCTAGGCCACAGACACCTGCTGGAATAGCTGGACTT
AGTTCCCCTGGTTTTGAAGACATTTTCGGTGCAATGCAGGACACCAATTC
ACTGAACCAGATGTTGCAAAATCCAGCTGTCACACAAATGATGCAAAGCC
TTCTCTCCAATCCCCAGTACATGAACCAGATTCTTGGTCTTAATCCACAG
CTGCGCAGCATGGTTGATTCCAATTCTCAACTGAGAGAAATGATACAAAA
TCCTGAATTTCTTCGTCAGTTGACTAATCCTGAGACGATGCAGCAAATGG
TGACTTTGCAGCAATTTCTCTTGACTCAACTTGGTCGGGCACAGTCAACG
CAGCAACCAGGCCAGACTGGTGGAGGCACAGGGACTCCTAACATGGGGTT
GGAGATGTTAATGAACATGTTTGGTGGACTTGGGGCGGGCAGCCTAGCTG
TTCCTAACAGATCTGATGTGCCTCCAGAGCAATTATATGCCACCCAGTTG
TCACAACTTCAAGAAATGGGTTTCTTTGATACACAAGAAAATATTCGGGC
TTTAATTGCAACTGCTGGAAATGTCCATGCTGCAGTGGAGCGACTCTTGG
GGAATTCTGGTCAGTAGGTTGCTATCAATGTTTAATATCACCTGGTTAGT
GCCGTGATAAGGACTGGTGGGGATCAATCGGTTGAACTGGAGTCATATTC
AAGCCCNATTTGGGTATGAATAATTT
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