FC875602

Overview
NameFC875602
Unique NameFC875602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTF_ARATH (Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 2.293e-104
Identity = 180/232 (77.59%), Postives = 206/232 (88.79%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            TSFA+R+TLEPWLV+E+RI+GD +LIS+LASGLPTSE+SEH  DLEAL+S  LS  +P+DL IGVFSTANNFKRRMAVRRTWMQY +VRSG VAVRFFVGLHK+ +VN ELWNEARTYGD+QLMPFVDYY+LI+WKTLAICIFGT+V SAKF+MKTDDDAFVRVDEVL SL   N   GL+YGLINS+S+P RNP+SKWYIS EEWPEE YPPWAHGPGY+VS DI ++V K
Sbjct:  334 TSFAFRDTLEPWLVSEIRITGDFRLISILASGLPTSEESEHVVDLEALKSPTLSPLRPLDLVIGVFSTANNFKRRMAVRRTWMQYDDVRSGRVAVRFFVGLHKSPLVNLELWNEARTYGDVQLMPFVDYYSLISWKTLAICIFGTEVDSAKFIMKTDDDAFVRVDEVLLSLSMTNNTRGLIYGLINSDSQPIRNPDSKWYISYEEWPEEKYPPWAHGPGYIVSRDIAESVGK 565          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTG_ARATH (Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.686e-78
Identity = 140/232 (60.34%), Postives = 178/232 (76.72%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            TSFAYRE LEPWLV+ V++SG LK++SVLA+ LP  +D       E L++  LS  + ++L +GVFST NNFKRRMA+RR+WMQY  VRSG VAVRF +GLH N+ VN E+W E++ YGDIQ MPFVDYY L++ KT+A+CI GT V+ AK++MKTDDDAFVR+DE+L+SL+     S LLYGLI+ +S P R   SKW+I  EEWP ++YPPWAHGPGY++SHDI K V K
Sbjct:  314 TSFAYREKLEPWLVSAVKVSGGLKILSVLATRLPIPDDHASLIIEEKLKAPSLSGTR-IELLVGVFSTGNNFKRRMALRRSWMQYEAVRSGKVAVRFLIGLHTNEKVNLEMWRESKAYGDIQFMPFVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDAFVRIDELLSSLEE-RPSSALLYGLISFDSSPDREQGSKWFIPKEEWPLDSYPPWAHGPGYIISHDIAKFVVK 543          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTH_ARATH (Probable beta-1,3-galactosyltransferase 17 OS=Arabidopsis thaliana GN=B3GALT17 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.118e-50
Identity = 100/236 (42.37%), Postives = 147/236 (62.29%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKD 701
            TSF YR          + + G++ + SV A+ LP++  S   +   +++ +   P    KPV+LFIG+ S  N+F  RMAVR++WMQ   VRS  V  RFFV LH  + VN +L  EA  +GDI ++P++D+Y+L+  KT+AIC +G + V+AK+VMK DDD FVRVD V+   +++     L  G IN   +P R    KW ++ EEWPEE YPP+A+GPGY++S+D+ K +  D
Sbjct:  364 TSFPYRTGFVLEDATGLAVKGNIDVHSVYAASLPSTNPSFAPQKHLEMQRIWKAPSLPQKPVELFIGILSAGNHFAERMAVRKSWMQQKLVRSSKVVARFFVALHARKEVNVDLKKEAEYFGDIVIVPYMDHYDLVVLKTVAICEYGVNTVAAKYVMKCDDDTFVRVDAVIQEAEKVKGRESLYIGNINFNHKPLRT--GKWAVTFEEWPEEYYPPYANGPGYILSYDVAKFIVDD 597          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTJ_ARATH (Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.906e-50
Identity = 104/236 (44.07%), Postives = 146/236 (61.86%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKD 701
            TSF YR          + I+GD+ + SV A  LPTS  S   +   +L +    P    + VD+FIG+ S  N+F  RMAVRR+WMQ+  V+S  V  RFFV LH  + VN EL  EA  +GDI ++P++D Y+L+  KT+AIC +G   ++AKF+MK DDD FV+VD VL+  K+      L  G IN   +P R  + KW ++ EEWPEE YPP+A+GPGY++S+DI + + K+
Sbjct:  371 TSFPYRTGFTLEDATGLTINGDIDVHSVFAGSLPTSHPSFSPQRHLELSSNWQAPSLPDEQVDMFIGILSAGNHFAERMAVRRSWMQHKLVKSSKVVARFFVALHSRKEVNVELKKEAEFFGDIVIVPYMDSYDLVVLKTVAICEYGAHQLAAKFIMKCDDDTFVQVDAVLSEAKKTPTDRSLYIGNINYYHKPLR--QGKWSVTYEEWPEEDYPPYANGPGYILSNDISRFIVKE 604          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTI_ARATH (Probable beta-1,3-galactosyltransferase 18 OS=Arabidopsis thaliana GN=B3GALT18 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46
Identity = 97/233 (41.63%), Postives = 139/233 (59.66%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAV 692
            TSF YR          + ++GD+ + SV  + LPTS  S   +   +L      P+    PV++FIG+ S  N+F  RMAVR++WMQ+  + S  V  RFFV LH  + VN EL  EA  +GDI L+P++D Y+L+  KT+AIC  G    SAK++MK DDD FV++  V+  +K++     L  G +N   +P R    KW ++ EEWPEE YPP+A+GPGYV+S DI + +
Sbjct:  362 TSFPYRTGFTLEDATGLTVNGDIDVHSVFVASLPTSHPSFAPQRHLELSKRWQAPVVPDGPVEIFIGILSAGNHFSERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGDIVLVPYMDSYDLVVLKTVAICEHGALAFSAKYIMKCDDDTFVKLGAVINEVKKVPEGRSLYIGNMNYYHKPLRG--GKWAVTYEEWPEEDYPPYANGPGYVLSSDIARFI 592          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTK_ARATH (Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 93/239 (38.91%), Postives = 136/239 (56.90%), Query Frame = 3
Query:    3 TSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDS---EHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDTGR 710
            +SF YR          + ++GD+ + S+ A+ L TS  S   +   +  +    P     P  LF+GV S  N+F  RMAVR+TWMQ+  ++S  V  RFFV L+  + VN  L  EA  +GDI ++PF+D Y L+  KT+AIC FG   V+A ++MK DDD F+RV+ +L  +  ++    L  G +N   RP R    KW ++ EEWPE  YPP+A+GPGY++S +I K +     R
Sbjct:  375 SSFPYRPGFTIEDATGLAVTGDVDIHSIHATSLSTSHPSFSPQKAIEFSSEWKAPPLPGTPFRLFMGVLSATNHFSERMAVRKTWMQHPSIKSSDVVARFFVALNPRKEVNAMLKKEAEYFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAPYIMKCDDDTFIRVESILKQIDGVSPEKSLYMGNLNLRHRPLRT--GKWTVTWEEWPEAVYPPYANGPGYIISSNIAKYIVSQNSR 611          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT5_GORGO (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gorilla gorilla gorilla GN=B3GALT5 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E+R +GDI    F+D Y  +T KT+     G + V      A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV S D+   VY
Sbjct:   56 PPFLVLLVTSSHKQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESRRHGDIIQKDFLDVYYNLTLKTM----MGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVY 230          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT5_PANTR (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan troglodytes GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E++ +GDI    F+D Y  +T KT+     G + V      A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV S D+   VY
Sbjct:   56 PPFLVLLVTSSHRQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTM----MGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVY 230          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT5_PANPA (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan paniscus GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 59/175 (33.71%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E++ +GDI    F+D YYNL     + I         A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV S D+   VY
Sbjct:   56 PPFLVLLVTSSHKQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDGYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVY 230          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT5_HUMAN (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-----SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            P  L + V S+      RMA+R+TW +   V+   +   F +G   +     E+  E++ +GDI    F+D Y  +T KT+     G + V      A FVMKTD D F+ VD +   L + N  +    G +     P R P SKW++S  E+P + YPP+  G GYV S D+   VY
Sbjct:   56 PPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTM----MGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVY 230          
The following BLAST results are available for this feature:
BLAST of FC875602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
B3GTF_ARATH2.293e-10477.59Beta-1,3-galactosyltransferase 15 OS=Arabidopsis t... [more]
B3GTG_ARATH3.686e-7860.34Probable beta-1,3-galactosyltransferase 16 OS=Arab... [more]
B3GTH_ARATH1.118e-5042.37Probable beta-1,3-galactosyltransferase 17 OS=Arab... [more]
B3GTJ_ARATH1.906e-5044.07Probable beta-1,3-galactosyltransferase 19 OS=Arab... [more]
B3GTI_ARATH1.670e-4641.63Probable beta-1,3-galactosyltransferase 18 OS=Arab... [more]
B3GTK_ARATH5.373e-4538.91Probable beta-1,3-galactosyltransferase 20 OS=Arab... [more]
B3GT5_GORGO1.574e-2034.08Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gor... [more]
B3GT5_PANTR4.580e-2033.52Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
B3GT5_PANPA5.982e-2033.71Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
B3GT5_HUMAN5.982e-2033.52Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC31405G04EF CTVClemen1 Citrus clementina cDNA clone C31405G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875602 ID=FC875602; Name=FC875602; organism=Citrus clementina; type=EST; length=711bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTGTCCCATGACATAGGAAAGGCAGTGTACAAAGA
TACAGGAAGGG
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