FC875612

Overview
NameFC875612
Unique NameFC875612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.954e-34
Identity = 86/192 (44.79%), Postives = 104/192 (54.17%), Query Frame = 2
Query:  143 MCGGAIISGYVPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            MCGGAIIS ++PP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKV F
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32
Identity = 84/186 (45.16%), Postives = 103/186 (55.38%), Query Frame = 2
Query:  143 MCGGAIISGYVPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            MCGGAIIS ++PP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKV F
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 73/180 (40.56%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  143 MCGGAIISGYVPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKV F
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 69/169 (40.83%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  143 MCGGAIISGYVPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+ F
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNF 134          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  449 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+ F
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  461 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+ F
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  389 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+ F
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  383 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+ F
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.003e-14
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 2
Query:  416 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               RG KAK+ F
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  440 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+ F
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94          
The following BLAST results are available for this feature:
BLAST of FC875612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RAP22_ARATH1.954e-3444.79Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH3.119e-3245.16Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ6.300e-2540.56Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH5.333e-2440.83Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH2.170e-1761.19Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH4.525e-1557.14Ethylene-responsive transcription factor ERF073 OS... [more]
EF109_ARATH1.317e-1446.59Ethylene-responsive transcription factor ERF109 OS... [more]
EF110_ARATH2.246e-1443.82Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH5.003e-1452.56Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF113_ARATH1.115e-1348.57Ethylene-responsive transcription factor ERF113 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31405H03EF CTVClemen1 Citrus clementina cDNA clone C31405H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875612 ID=FC875612; Name=FC875612; organism=Citrus clementina; type=EST; length=722bp
GAATCTCATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCA
ACAAAAGCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTC
TTTAGTGCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGG
AGGTGCTATCATTTCGGGCTACGTCCCGCCCACCGTGCCGGGCCGGCCAA
AGAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAAC
AAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCA
AGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACG
TTGATGCCGACTTGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCT
GGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAA
AAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGC
GTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTT
CGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTA
TGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTACTTTCC
AGATGAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGCAACTCTCAG
AATCCGTTCCAAAGCTGCTAGC
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