FC875617

Overview
NameFC875617
Unique NameFC875617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11150 contig Ccv1_Contig11150:275..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875617 vs. ExPASy Swiss-Prot
Match: CP058_PONAB (UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  394 SPQAPAEELMSFIRSYAVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRVGK 651
            +P AP+  L S +++  +P GFPDSV+P Y+PY  W +++ F  G  G   TQ +L  +GV   +AT  A    W++KD  G +G+
Sbjct:   62 APGAPSPPL-SGLQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGR 146          
BLAST of FC875617 vs. ExPASy Swiss-Prot
Match: CP058_MOUSE (UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  421 MSFIRSYAVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRVGK 651
            +S +RS  +P GFPDSV+P Y+PY  W +++ F     G   TQ +L  +GV   +A+  A    W++KD  G +G+
Sbjct:   68 LSGLRSVLLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGR 144          
BLAST of FC875617 vs. ExPASy Swiss-Prot
Match: CP058_HUMAN (UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  421 MSFIRSYAVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRVGK 651
            +S +++  +P GFPDSV+P Y+PY  W +++ F     G   TQ +L  +GV   +AT  A    W++KD  G +G+
Sbjct:   70 LSGLQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGR 146          
BLAST of FC875617 vs. ExPASy Swiss-Prot
Match: CP058_RAT (UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query:  253 LVEDQFVDSSLRLICSEDIDGR-RWNYVAERDRSGKFKRNSIRAISL-----QSPQAPAEELMSFIRSYAVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRVGK 651
            L  +QF   + R  CS   DG  +W+      R G F R SI          + P A A   +S +RS  +P GFPDSV+P Y+ Y  W +++ F     G   TQ +L  +GV   +A+  A    W++KD  G +G+
Sbjct:   11 LCTEQFGSGAPRS-CSAAADGSLQWD---RAQRWGWFSRASITKPGQHEGGGRGPWA-ALTTLSGLRSVLLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGR 144          
The following BLAST results are available for this feature:
BLAST of FC875617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CP058_PONAB2.319e-1238.37UPF0420 protein C16orf58 homolog OS=Pongo abelii P... [more]
CP058_MOUSE1.963e-1137.66UPF0420 protein C16orf58 homolog OS=Mus musculus P... [more]
CP058_HUMAN5.713e-1136.36UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf... [more]
CP058_RAT7.461e-1133.09UPF0420 protein C16orf58 homolog OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionC31405H09EF CTVClemen1 Citrus clementina cDNA clone C31405H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875617 ID=FC875617; Name=FC875617; organism=Citrus clementina; type=EST; length=659bp
TTTTTTTTTTTCCAAAATTCGGATTCCGTTGCTCCTCAATTATGACTACT
CCTCCTCCAATCAAACTAAAGCAATCCGCAAACTCCACTGCGGCTGCGGC
TTCCTCTGCGGCGCAGGACGCGCGGCTTCTCGTGCGCGAAACGATGCGTA
TAAGCGCCAACCTGGCGACGTCTAGTTCGCCGAGGCGTCGGGGGCGGAGG
CGCTGCCGCTACTTTGCTGCAATCTGAGTCGGACGAAACGACGGCGTTCC
GGCTCGTGGAAGATCAGTTCGTGGATTCGAGCCTGAGGTTGATTTGTAGC
GAGGATATCGACGGTCGGAGATGGAATTACGTGGCGGAGAGAGACCGTTC
TGGAAAGTTCAAGAGGAATTCCATTCGTGCAATCAGCTTGCAGAGCCCTC
AGGCTCCTGCTGAGGAGTTGATGTCGTTCATTAGATCCTATGCGGTGCCC
GATGGTTTCCCGGATAGCGTCACCCCTTCATATGTGCCGTATATGACTTG
GAGGGCTTTGAAGCACTTCTTTGGTGGAGCAATGGGTGTTTTCACAACCC
AAACCCTTTTGAATTCTGTTGGTGTCTCTAGAAACAGAGCAACTCCTGGT
GCTGTTGCTATCAATTGGATTCTCAAGGATGGTGCTGGTCGAGTTGGAAA
ATGATTTTT
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