FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.535e-106
Identity = 195/206 (94.66%), Postives = 200/206 (97.09%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEK 735
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE+SV KIQ LTPNIGVVYSGMGPDFRVLVRKSR+QAEQY RLYKEPIPVTQLVRETA VMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEGFEG+IS K
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSK 206          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 4.466e-106
Identity = 194/206 (94.17%), Postives = 199/206 (96.60%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEK 735
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE+SV KIQ LTPNIG VYSGMGPDFRVLVRKSR+QAEQY RLYKEPIPVTQLVRETA VMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEGFEG+IS K
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSK 206          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 2.895e-105
Identity = 191/204 (93.63%), Postives = 200/204 (98.04%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKA+NGVVIATEKKLPSILVDE+SV KIQSLTPNIGVVYSGMGPDFRVLVRKSR+QA+QY+RLYKE IPVTQLVRETAAVMQEFTQSGGVRPFGVSLL+AGYDD GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEG+EGQIS
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQIS 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 2.895e-105
Identity = 191/204 (93.63%), Postives = 200/204 (98.04%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKA+NGVVIATEKKLPSILVDE+SV KIQSLTPNIGVVYSGMGPDFRVLVRKSR+QA+QY+RLYKE IPVTQLVRETAAVMQEFTQSGGVRPFGVSLL+AGYDD GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEG+EGQIS
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQIS 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 295.819 bits (756), Expect = 1.599e-79
Identity = 144/206 (69.90%), Postives = 177/206 (85.92%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEK 735
            M D  YSFSLTTFSPSGKLVQIE+AL AV +G  S+GIKASNGVV+ATEKK  SIL DE SVHKI+ +T +IG+VYSGMGPD+RVLVR++R+ A+QY  +Y+EPIP  QLV+  A+VMQE+TQSGGVRPFGVSLL+AG+D+  P L+Q DPSG+YF+WKA+AMGK+  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++E+
Sbjct:    1 MADRGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEE 206          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 4.654e-79
Identity = 141/205 (68.78%), Postives = 176/205 (85.85%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            M +  YSFSLTTFSPSGKLVQIE+AL AV +G  S+GIKA+NGVV+ATEKK  SIL DE S HK++ +T +IG+VYSGMGPD+RVLVR++R+ A+QY+ +Y+EPIP  QLV+  A+VMQE+TQSGGVRPFGVSLL+AG+D+  P L+Q DPSG+YF+WKA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++E
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE 205          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.938e-79
Identity = 141/203 (69.46%), Postives = 179/203 (88.18%), Query Frame = 1
Query:  124 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            DS YSFSLTTFSPSGKLVQIEHAL A  SG +++GIKA NGVV+ TEKKL S LVD +SV KI  +T NIG+VY+GMGPD RVL++K+R+++E+Y++ YKE IPV QLVRE A++MQEFTQSGGVRPFGVSLLVAG+D+KGP LYQVDPSGSYF+WKA+A+GKN+ ++KTFLEKRY +++E++DA+ TA++T+KEGFE Q++E
Sbjct:    2 DSDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHS-LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTALITIKEGFETQLTE 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 1.146e-77
Identity = 139/205 (67.80%), Postives = 174/205 (84.88%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            M +  YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RVLV ++R+ A+QY+ +Y+EPIP  QLV+  A+VMQE+TQSGGVRPFGVSLL+ G+++  P L+Q DPSG+YF+WKA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++E
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE 205          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 1.146e-77
Identity = 139/205 (67.80%), Postives = 174/205 (84.88%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            M +  YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RVLV ++R+ A+QY+ +Y+EPIP  QLV+  A+VMQE+TQSGGVRPFGVSLL+ G+++  P L+Q DPSG+YF+WKA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++E
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE 205          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 1.146e-77
Identity = 139/205 (67.80%), Postives = 174/205 (84.88%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            M +  YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RVLV ++R+ A+QY+ +Y+EPIP  QLV+  A+VMQE+TQSGGVRPFGVSLL+ G+++  P L+Q DPSG+YF+WKA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++E
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTE 205          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA2A_ARATH1.535e-10694.66Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA2B_ARATH4.466e-10694.17Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2_ORYSJ2.895e-10593.63Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI2.895e-10593.63Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_CARAU1.599e-7969.90Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2_XENLA4.654e-7968.78Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2_DICDI7.938e-7969.46Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA2_RAT1.146e-7767.80Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_HUMAN1.146e-7767.80Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN1.146e-7767.80Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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