FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.402e-65
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P     GQEPG+NEEIQ+  CT FKAEFPIFDK+DVNGKN AP+YK+LK+EKGG L DAIKWNFTKFLV+ +GKV++RY+P TSPL+ EKDIQ  LG
Sbjct:   69 PCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQTALG 165          

HSP 2 Score: 119.398 bits (298), Expect = 1.402e-65
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 3
Query:  141 EAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            E+PKSIYDF+VKDI GNDVSL  Y+GK LLVVNVASKCGLT +NYKELNVLYEKYK Q  E+LAFPCNQ
Sbjct:    4 ESPKSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQ 72          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.063e-62
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P      QEPG+NEEI + ACT FKAE+PIFDK+DVNG  AAP+YKFLKS KGG  GD IKWNF KFLV+K+G VV+R+APTTSPL IEKD++ LLG
Sbjct:  133 PCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLLG 229          

HSP 2 Score: 113.235 bits (282), Expect = 1.063e-62
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  111 SFSAKNMATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            S S  +MA    PKS+YDF+VKD +GNDV LS Y+GKVLL+VNVAS+CGLT SNY EL  LYEKYK   FE+LAFPCNQ
Sbjct:   58 SRSEHSMAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQ 136          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.087e-62
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 628
            P      QEPG NE+I E ACT FKAEFPIFDK+DVNG NAAP+YK+LKS KGG  GD IKWNFTKFLV+++GKVV+RYAPTTSP  IEKDI+ L+G+
Sbjct:   72 PCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIGT 169          

HSP 2 Score: 106.301 bits (264), Expect = 3.087e-62
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 3
Query:  129 MATQ--EAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            MA+Q  + PKSI+DF VKD RGNDV LS Y+GKVLL+VNVAS+CGLT SNY EL  LYE+YK++  E+LAFPCNQ
Sbjct:    1 MASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQ 75          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.571e-61
Identity = 67/98 (68.37%), Postives = 77/98 (78.57%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 628
            P      QEPGSN EI+E  C +FKAEFPIFDKI+VNGKN  P+Y FLK +KGG  GDAIKWNF KFLV+++G VV+RYAPTTSPL+IEKDI  LL S
Sbjct:  108 PCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLLAS 205          

HSP 2 Score: 110.923 bits (276), Expect = 2.571e-61
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 3
Query:   99 KYPSSFSAKNMATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +YPSS S      +++  SIY+ SVKDI G DVSLS + GKVLL+VNVASKCGLT  NYKE+N+LY KYK Q FE+LAFPCNQ
Sbjct:   33 RYPSSPST----VEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQ 111          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.457e-61
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG NE+IQE ACT FKAEFPIFDK+DVNG NAAP+YK LKS KGG  GD+IKWNF+KFLV+KEG VVERYAPTTSPL IEKDI+ LL
Sbjct:   69 PCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 164          

HSP 2 Score: 101.679 bits (252), Expect = 7.457e-61
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 3
Query:  129 MATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            MA+Q +  S++DF+VKD +G DV LS Y+GK+LL+VNVAS+CGLT SNY EL+ LY+KYKNQ  E+LAFPCNQ
Sbjct:    1 MASQ-SKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 72          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.155e-60
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P     GQEPG+ E+IQ++ CT FKAE+PIFDK+DVNG NAAP+Y+FLKS KGGF GD IKWNF+KFL++KEG VV+RY+PTTSP  +EKDI+ LLG
Sbjct:   71 PCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLLG 167          

HSP 2 Score: 104.375 bits (259), Expect = 2.155e-60
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:  129 MATQEA-PKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            MATQ + P+S+YDF+VKD +G DV LS Y+GKVL++VNVAS+CGLT SNY ++  LY+KYK+Q  E+LAFPCNQ
Sbjct:    1 MATQTSNPQSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQ 74          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.809e-60
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEE-IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P     GQEPGS EE IQ + CT FKAE+PIFDK+DVNG NAAP+YKFLKS KGGF GD+IKWNF+KFLV+KEG VV+RY+PTT+P  +EKDI+ LLG
Sbjct:   71 PCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLG 168          

HSP 2 Score: 105.916 bits (263), Expect = 2.809e-60
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 3
Query:  129 MATQEA-PKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            MA+Q + P+SIYDF+VKD +GNDV LS Y+GKVL++VNVAS+CGLT SNY +L  +Y+KYK+Q  E+LAFPCNQ
Sbjct:    1 MASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQ 74          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.109e-60
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGSNEEIQ  ACT FKAE+P+F K++VNGK A P+YKFLKS KGGFLGD+IKWNFTKFLV++EGKVV+RYAPTTSPL IEKDI+ LL
Sbjct:   82 PCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLL 177          

HSP 2 Score: 96.2857 bits (238), Expect = 8.109e-60
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 3
Query:  165 FSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            FS KD++G DV LS Y+GKVLL+VNVAS+CG T SNY EL  LY+KYK+Q FE+LAFPCNQ
Sbjct:   25 FSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQ 85          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.374e-59
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 601
            P     GQEPGSN EI++ ACT FKAEFPIFDK+DVNG + APIYKFLKS  GGFLGD IKWNF KFLV+K+GKVVERY PTTSP +IE
Sbjct:  136 PCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIE 224          

HSP 2 Score: 109.383 bits (272), Expect = 1.374e-59
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  132 ATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A   A KS++DF+VKDI GNDVSL  ++GK LL+VNVAS+CGLT SNY EL+ LYEKYKNQ FE+LAFPCNQ
Sbjct:   68 ARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQ 139          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 5.174e-59
Identity = 68/98 (69.39%), Postives = 78/98 (79.59%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 628
            P      QEPGSN EI++ ACT FKAEFPIFDK+DVNG + APIY+FLKS  GGFLG  IKWNF KFL++K+GKVVERY PTTSP +IEKDIQ LL +
Sbjct:  139 PCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLLAA 236          

HSP 2 Score: 103.99 bits (258), Expect = 5.174e-59
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  132 ATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A   A K+++DF+VKDI G DV+L+ ++GKV+L+VNVAS+CGLT SNY EL+ LYEKYK Q FE+LAFPCNQ
Sbjct:   71 ARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQ 142          
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX2_ARATH1.402e-6571.13Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX6_ARATH1.063e-6269.07Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR3.087e-6270.41Probable phospholipid hydroperoxide glutathione pe... [more]
GPX3_ARATH2.571e-6168.37Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX4_CITSI7.457e-6175.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC2.155e-6068.04Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI2.809e-6070.41Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_HELAN8.109e-6075.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX7_ARATH1.374e-5974.16Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX1_ARATH5.174e-5969.39Phospholipid hydroperoxide glutathione peroxidase ... [more]

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Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
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