FC875640

Overview
NameFC875640
Unique NameFC875640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14691 contig Ccv1_Contig14691:1162..1822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875640 vs. ExPASy Swiss-Prot
Match: EIF3A_ARATH (Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.704e-48
Identity = 110/202 (54.46%), Postives = 128/202 (63.37%), Query Frame = 2
Query:   26 FCNLGLESDGLRDHLTIFAQSLNKVRALIYPPANKASKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKXXXXXXXXXXXXXXXXXXLKQQKITEEAEQKRLAAEFEHRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQ 631
            F NLG+ESDGLRDHL +FA+SL+KVRA++YP  +KASKL  ++  L + V+KEHKRLLARKSIIEKRK                  LK QK+TEEAEQKRLAAE   R+                                         VTKQ++ ERALTEQL+ERQEMEKKLQKLAKTMDYLERAKREEAAPLI+AA+Q
Sbjct:  508 FGNLGIESDGLRDHLAVFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRK-QRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQ 708          
BLAST of FC875640 vs. ExPASy Swiss-Prot
Match: EIF3A_TOBAC (Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 93/184 (50.54%), Postives = 111/184 (60.33%), Query Frame = 2
Query:   80 AQSLNKVRALIYPPANKASKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKXXXXXXXXXXXXXXXXXXLKQQKITEEAEQKRLAAEFEHRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQ 631
            A+SL+K R +IYPPA KA+KLGE L+ L EIV+KEHKRLLARKSIIEKRK                     QK+TEEAEQKR+AAE+E R+N                                        +TK+ +ME AL EQLRERQEMEKKL K AK+MD+LERAKREEAAPLI++AF+
Sbjct:  526 AESLSKARTMIYPPAKKAAKLGEALSNLAEIVEKEHKRLLARKSIIEKRKEEQERLLLEMERVEETKRRDVQKMTEEAEQKRIAAEYEQRRN--QRILKEIEDRELEEAQALLHEAEKRSKRKKKPVLEGEKMTKKVIMELALNEQLRERQEMEKKLLKFAKSMDHLERAKREEAAPLIESAFK 707          
BLAST of FC875640 vs. ExPASy Swiss-Prot
Match: EIF3A_MAIZE (Eukaryotic translation initiation factor 3 subunit A OS=Zea mays GN=TIF3A1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.269e-34
Identity = 90/202 (44.55%), Postives = 104/202 (51.49%), Query Frame = 2
Query:   26 FCNLGLESDGLRDHLTIFAQSLNKVRALIYPPANKASKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKXXXXXXXXXXXXXXXXXXLKQQKITEEAEQKRLAAEFEHRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQ 631
            F  + +ESDGL DHL++ A SLNK R  I PP  K SKLGE L  L  IV+ EHKRLLARKSIIEKRK                  +  QK T + E+ RL  E   R+                                         +TK+  ME A  EQL+ER EMEKKLQK AKTMDYLERAKR+E APLI+ AFQ
Sbjct:  506 FGTVDIESDGLSDHLSVLADSLNKARIHICPPVKKPSKLGESLISLAAIVENEHKRLLARKSIIEKRKEELERQILEKEKEEEKKRMSSQKKTVDEERVRLLNEQRQREQ-----DRIRREIEEKNKAEAKKMLEDLNKAGKKHVVVEGELTKEAYMELARNEQLKERHEMEKKLQKFAKTMDYLERAKRQEEAPLIEQAFQ 702          
The following BLAST results are available for this feature:
BLAST of FC875640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
EIF3A_ARATH7.704e-4854.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_TOBAC5.534e-3850.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_MAIZE8.269e-3444.55Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC31401B11EF CTVClemen1 Citrus clementina cDNA clone C31401B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875640 ID=FC875640; Name=FC875640; organism=Citrus clementina; type=EST; length=662bp
GACCATATGAGAGGTGTTGTAGTTTTTTTGTAATTTGGGCCTTGAATCTG
ATGGTCTAAGGGATCACCTGACTATTTTTGCTCAGTCTTTAAATAAAGTG
CGGGCCTTGATATATCCTCCTGCAAATAAGGCATCAAAGCTAGGTGAAAT
GTTGGCTGGTTTAGGGGAGATTGTAGATAAGGAACATAAGAGGCTTCTTG
CGCGGAAATCAATCATTGAGAAAAGGAAGGAAGAGCATGAACGCCAACTT
ATTGAAATGGAACGTGAAGAAGAGTCTAGGAGGCTAAAGCAACAGAAGAT
AACAGAGGAGGCTGAGCAGAAGAGGCTTGCTGCTGAATTTGAGCATAGGA
AAAATCAAAGGATCCTCAGAGAAATAGAGGAGCGTGAACTTGAAGAAGCG
CAAGCACTGCTTGAAGAAGCTGAGAAGCGCAATAAAAAGAAGGGAGGCAA
AAAGCCAATCTTAGAGGGGGAAAAAGTGACAAAACAAACTTTGATGGAGC
GAGCCCTGACCGAGCAGCTGAGGGAGAGGCAAGAGATGGAGAAAAAGTTA
CAAAAACTAGCCAAGACAATGGATTATTTGGAAAGAGCAAAAAGAGAAGA
GGCTGCCCCCTTGATTGATGCTGCTTTCCAACACGGTTGGAGGAGGAGAG
GTGCTTCATGAA
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