FC875644

Overview
NameFC875644
Unique NameFC875644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15217 contig Ccv1_Contig15217:3..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.527e-85
Identity = 150/192 (78.12%), Postives = 165/192 (85.94%), Query Frame = 2
Query:   71 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 646
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+ELVK+T +MKSFKA+DK+R+ER N+RH GA
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGA 192          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.095e-83
Identity = 150/192 (78.12%), Postives = 161/192 (83.85%), Query Frame = 2
Query:   71 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 646
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +ELVK+T +MKS  AYDK+R+ER N+RH GA
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGA 192          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.160e-83
Identity = 149/192 (77.60%), Postives = 161/192 (83.85%), Query Frame = 2
Query:   71 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 646
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   ELVK+T +MKS KA+DK+R+ER N+RH GA
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGA 192          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 7.095e-83
Identity = 148/192 (77.08%), Postives = 162/192 (84.38%), Query Frame = 2
Query:   71 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 646
            MKHNNVIP+ HF+KHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +ELVK+T D+K+FKAYDK+R+ER N RH GA
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGA 192          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.444e-75
Identity = 138/191 (72.25%), Postives = 153/191 (80.10%), Query Frame = 2
Query:   71 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            MKHNNVIPNGHFKK W+NYVKT FNQP                IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH G
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAG 191          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.941e-64
Identity = 122/184 (66.30%), Postives = 138/184 (75.00%), Query Frame = 2
Query:   95 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 646
            NGHFKKHWQNYVKTWFNQP                I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GA
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGA 188          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.946e-56
Identity = 106/188 (56.38%), Postives = 133/188 (70.74%), Query Frame = 2
Query:   71 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNER 634
            ++ N+++PNGHF K WQ +VKTWFNQP                 FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +ELVK+T DMK    Y KLRIERVN R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNAR 189          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.199e-51
Identity = 103/188 (54.79%), Postives = 126/188 (67.02%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I N HF K WQ  V+TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.063e-50
Identity = 100/191 (52.36%), Postives = 128/191 (67.02%), Query Frame = 2
Query:   74 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP-TVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            K NN+IPN H+ K WQ +VKTWFNQP                +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  VE  +VT+D K FKA+  LR  R + R  G
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 9.679e-48
Identity = 97/188 (51.60%), Postives = 121/188 (64.36%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I N HF K WQ  V+TWFNQP                I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI       +   +T++ K F A+  LR+ R N R FG
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFG 193          
The following BLAST results are available for this feature:
BLAST of FC875644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH1.527e-8578.1360S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA1.095e-8378.1360S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA4.160e-8377.6060S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH7.095e-8377.0860S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH2.444e-7572.25Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC1.941e-6466.3060S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW1.946e-5656.3860S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE4.199e-5154.7960S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME6.063e-5052.3660S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU9.679e-4851.6060S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC31401C03EF CTVClemen1 Citrus clementina cDNA clone C31401C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875644 ID=FC875644; Name=FC875644; organism=Citrus clementina; type=EST; length=748bp
GGTTGGCTCTGTTGCCGTCGAGACTGAGAGAAACGGACATAGTCGTCTGC
ATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAATGGG
CACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACCAACC
TGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTTAAAA
TCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCCAG
ACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGA
GGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATTGGTG
TTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCT
AATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAG
ACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAA
CAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAAGCCT
ACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCTTA
TGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGTGCCAGGA
TGAAGAAGCTGCAGAGGCTGAAAAGGAAGAGAGAAGTAAAAAACTTGTTT
AAGCACACTTTGAATGTGGCTGTTTTTGCATTTGTTAAGTGATTCATC
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