FC875649

Overview
NameFC875649
Unique NameFC875649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15086 contig Ccv1_Contig15086:56..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.559e-87
Identity = 163/231 (70.56%), Postives = 184/231 (79.65%), Query Frame = 2
Query:   23 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT 712
            MAM +   R++++ KRS KK++EE LY+RLFK G ++V VRQQLNQFLK  K VFKWEVGDT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK + I A ENYFVDLPETSK  LTYGSLLNCYCKEL+T                 SSM +NSLMTLY KTG  EK+PA+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA DWT
Sbjct:    1 MAM-RHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWT 230          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 78/223 (34.98%), Postives = 124/223 (55.61%), Query Frame = 2
Query:   44 GRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 709
            G   ++A  +    +  LY +L     +  +V + LNQF+     V K ++    K LR  +    A ++ + MEKR M  +VSD AI LDL+ K +G++AAENYF +L  ++KNH  TYG+L+NCYC EL                   +S+PFN++M++Y +   PEK+P ++  MK   I P   TY++WM++  ++ND+ G E++I+EM +D      W
Sbjct:   56 GVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTW 278          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 79/219 (36.07%), Postives = 124/219 (56.62%), Query Frame = 2
Query:   56 NIAKRSKKHLEEALYDRLFKKGS-SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 709
            ++  ++KKH   ++Y +L   G+     + + LNQF+     V K ++    K LR  +    AL++ E ME++ +  T SD AI L+L+AK +G++AAE YF  L ++ KN  TYGSLLNCYC E                    +S+PFN+LM +Y   G PEK+PA++  MK  SI P   TY++W+++  ++ D+ G E+V++EMK +G     W
Sbjct:   30 SVPTKAKKH--RSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSW 246          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 68/209 (32.54%), Postives = 108/209 (51.67%), Query Frame = 2
Query:   92 ALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT 712
            A+Y ++      ++     LNQ+ K+ +++ KWE+   +K+LR  K    AL++ + M  RG     + SD AI LDL+ KV+GI  AE +F+ LPE  K+   YGSLLN Y +                       +PFN +MTLY      +K+ A++ EMK   I  D Y+YN+W+ +  ++  +   E V ++MK D  +  +WT
Sbjct:   68 AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWT 276          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 65/206 (31.55%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   95 LYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 709
            LY ++   G    SV  +L  +++  K+V   E+   +  LR RK +  AL++S+ M + G+   + ++ A+HLDL+ +V G   AE YF +L E  KN  TYG+LLNCY ++                    SS+ +N++M LY   G  EK+P +++EMK  ++ PD+Y+Y + + A  A+ D+      + +M+R   +  DW
Sbjct:   27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDW 232          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 65/211 (30.81%), Postives = 119/211 (56.40%), Query Frame = 2
Query:   95 LYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW-THSV 721
            L   ++ K S+ V++R+    + +    V K+E+   +++LR  K Y  AL++ E M  +  +     D A+HLDL++K++G+++AE +F D+P+  + H    SLL+ Y +  ++                 S +P+N ++++Y   G  EK+P +I+E+K  +  PD  TYN+W+ A A+ ND+ GAE+V  + K + ++  DW T+SV
Sbjct:   67 LLSLVYTKRSAVVTIRK----WKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEE-KLNPDWVTYSV 271          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 65/214 (30.37%), Postives = 108/214 (50.47%), Query Frame = 2
Query:   86 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXX-GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTHSV 721
            ++ L  R+F+      S    L +++    ++   E+ +  K+LR  + Y  AL+++E M +   +K + +D A  +DL++KV GIDAAE YF  L   SK   TY SLL+ Y     T                 F ++ +N +MTLY   G  EK+P +I+ +K   + PD +TYN+W+ + AA  +I    +++EEM+ D      W   +
Sbjct:   54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYI 267          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 57/208 (27.40%), Postives = 105/208 (50.48%), Query Frame = 2
Query:   89 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 709
            + L  R+ + G    S+ + L+ +L     V   E+   +K LR    +  AL++S+ M +  +++ +  D AI LDL+AKV G+  AE +F  +P   +N+  YG+LLNCY  + +                    +P+N ++ LY +TG    +  +++EM+  ++ PD +T N  + A + V+D+ G E+ +   + D  +  DW
Sbjct:   38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDW 245          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 65/226 (28.76%), Postives = 100/226 (44.25%), Query Frame = 2
Query:   50 TKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN----HLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT 712
            T ++A R+   L+E L     +K     SV   L + + S   V   E+    K+L     Y  AL++ E ME ++ +  +V D A+ LDL+ K  G+   E YF  L  +S +       Y  LL  Y K  M                  +  PFN +M LY  +G  EK+  ++  MK + I  +  +YN+WM A   V+ ++  E V +EM  D  V   W+
Sbjct:   32 TSSVANRNS--LKEIL-----RKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWS 250          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  140 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 709
            RQQ NQ   S  RV        +KKLRD      AL++SE M K  + N    D A  L L+  V G++ AE +F  +P+ ++    Y SLLN Y +   T                    +P+N++M+LY+   + EK+  ++ EMK + +  D+ T N  ++  +AV D++  E+ + + +    +  +W
Sbjct:   60 RQQGNQVNPSHVRVI-------IKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEW 244          
The following BLAST results are available for this feature:
BLAST of FC875649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PPR86_ARATH7.559e-8770.56Pentatricopeptide repeat-containing protein At1g60... [more]
PPR4_ARATH1.496e-3434.98Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH2.821e-3336.07Pentatricopeptide repeat-containing protein At4g01... [more]
PPR3_ARATH4.661e-2832.54Pentatricopeptide repeat-containing protein At1g02... [more]
PP334_ARATH1.499e-2631.55Pentatricopeptide repeat-containing protein At4g21... [more]
PP302_ARATH1.188e-2330.81Pentatricopeptide repeat-containing protein At4g02... [more]
PP372_ARATH1.716e-2230.37Pentatricopeptide repeat-containing protein At5g09... [more]
PP166_ARATH5.519e-2127.40Pentatricopeptide repeat-containing protein At2g20... [more]
PP400_ARATH1.317e-1428.76Pentatricopeptide repeat-containing protein At5g27... [more]
PPR61_ARATH6.534e-1428.65Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC31401C08EF CTVClemen1 Citrus clementina cDNA clone C31401C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875649 ID=FC875649; Name=FC875649; organism=Citrus clementina; type=EST; length=723bp
TAGAGAAAGCTAAAGAAGAAAAATGGCGATGCCGCAACGGTTTGGGAGGA
CCAAGAACATAGCAAAGCGGTCGAAGAAGCACTTGGAAGAAGCGCTTTAC
GACAGGCTATTCAAAAAAGGTAGCTCCGACGTTAGCGTTCGACAGCAGCT
GAACCAGTTTCTCAAGAGCAAAAAACGTGTCTTCAAATGGGAAGTCGGCG
ACACTCTCAAGAAGCTTCGCGATCGCAAGCTCTATTACCCTGCCCTCAAG
TTATCAGAAAATATGGAAAAGAGGGGTATGAACAAGACAGTCAGTGATCA
AGCTATTCATCTTGATCTAGTTGCCAAAGTTCAAGGTATTGATGCTGCAG
AAAACTATTTTGTTGATCTTCCTGAAACATCAAAGAACCATCTTACATAT
GGTTCTCTTCTGAATTGCTACTGCAAGGAATTGATGACTGAAAAAGCAGA
AGCTCTCTTGGAAAAGATGAAGGAACTTAACCTTGGGTTTAGCTCCATGC
CTTTTAACAGCCTCATGACCCTTTATGCAAAGACTGGCCACCCAGAAAAA
ATACCAGCCATTATACAAGAAATGAAGGCGTCGAGTATCATGCCAGACTC
GTACACATACAATGTCTGGATGAGGGCTCTGGCTGCTGTCAATGATATTT
CTGGGGCTGAGAGAGTCATTGAAGAGATGAAGAGGGATGGTCGGGTTGCT
GCTGATTGGACACATTCAGTACT
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