FC875655

Overview
NameFC875655
Unique NameFC875655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.261e-52
Identity = 99/182 (54.40%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCD 633
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCD
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCD 188          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.261e-52
Identity = 99/182 (54.40%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCD 633
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCD
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCD 188          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 6.256e-52
Identity = 97/182 (53.30%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCD 633
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + +++  SGGCD
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 99/182 (54.40%), Postives = 123/182 (67.58%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCD 633
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCD
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCD 188          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.483e-50
Identity = 94/187 (50.27%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   82 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG---FLDPVQKLCSGGCD 633
            M  Q +++GHED VHD   DYYGK LAT SSD  IKI  VG    QHL  L GH+G VW+VAWAHPKFG ILAS S+D  VI+WKE  +N W   H +  H+ SVNSI WAPHE GL LAC SSDG++++     +  W+  +  Q   +GV SVSW+P+  P +LV S       P++++ +G CD
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCD 186          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.595e-47
Identity = 101/220 (45.91%), Postives = 127/220 (57.73%), Query Frame = 1
Query:   88 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-----------------------GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV------------GSGFLDPVQKLCSGGCD 633
            P+ IET HED VHD  +D+YGKRLAT SSD ++K+  + N T    A+ L GH+G VW+VAWAHP FG ILASCS+DG V+IWK+                        ++  W  IK+H    H +SVNSI WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP+  PG+L+             +G    V++  S GCD
Sbjct:   18 PKNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTL--HTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCD 234          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.143e-45
Identity = 91/183 (49.73%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV-GSGFLDPVQKLCSGGCD 633
            +GH+D +HD  MDYYG+RLAT SSD +IKI  +  ++ + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E +S     + W +   F  H +SVN + WAPHELG  LAC SSDG++SV   R D  W T +I  AH +GV SVSWAP+ APG+++  +     +++  +GG D
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSVSWAPAAAPGSVISATPSTGQIRRFVTGGSD 188          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.546e-45
Identity = 88/180 (48.89%), Postives = 116/180 (64.44%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCD 633
            ++T H+D +HD  +DYYGKRLAT SSD +IK+  + NN    L  L GH G VW++ WAHPKFG+ILAS S+DG VI+W+E G     + DH    H++SVN++ WAPHE G  LAC SSDG +SV   + DG  DT RI  AH  G  +V W+P +  G++VG       +KL + GCD
Sbjct:    4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRETGGVWSELMDHT--AHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCDT-RIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCD 180          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.671e-45
Identity = 88/170 (51.76%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +GH++ +HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S
Sbjct:    9 SGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISS 176          
BLAST of FC875655 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +GH+D +HD  +DYYG+RLAT SSD +IKI  +   + + +  L GH GAVW VAWAHPK+G+ILAS  +DG V+IW+E  +  W +   F  HK+SVN + W+PHE G  LAC SSDGN+SV   + D  W+   I  AH +GV SVSWAP+T PG++V S
Sbjct:   11 SGHDDMIHDAVLDYYGRRLATCSSDRTIKIFEIEGESQRLVETLKGHDGAVWSVAWAHPKYGNILASAGYDGKVLIWRE-QAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVLEFK-DNSWE-HNIFHAHGLGVNSVSWAPATTPGSIVSS 169          
The following BLAST results are available for this feature:
BLAST of FC875655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SEC13_RAT1.261e-5254.40Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE1.261e-5254.40Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN6.256e-5253.30Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN1.067e-5154.40Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI4.483e-5050.27Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA1.595e-4745.91Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_COCIM1.143e-4549.73Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_SCHPO2.546e-4548.89Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_ASPNC5.671e-4551.76Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_NEUCR1.650e-4451.85Protein transport protein sec-13 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionC31401D03EF CTVClemen1 Citrus clementina cDNA clone C31401D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875655 ID=FC875655; Name=FC875655; organism=Citrus clementina; type=EST; length=634bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATA
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