FC875661

Overview
NameFC875661
Unique NameFC875661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875661 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.751e-67
Identity = 124/206 (60.19%), Postives = 159/206 (77.18%), Query Frame = 2
Query:   86 PPGSTPSFLPIWKSFSDDVPQGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSI 703
            P      F P    F +   + S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+LPKVKNSAKGKVLMRA+YGVKV T+++  +
Sbjct:    4 PQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYGVKVKTLYISGV 209          
BLAST of FC875661 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.301e-54
Identity = 114/213 (53.52%), Postives = 142/213 (66.67%), Query Frame = 2
Query:   92 GSTPSFLPIWKSFSDDVPQGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSILLHLL 718
            GS  SF P+   F    P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS KGKVLMRA+YG++ +TVFVCSI + +L
Sbjct:    6 GSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVL 218          
BLAST of FC875661 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 114/213 (53.52%), Postives = 142/213 (66.67%), Query Frame = 2
Query:   92 GSTPSFLPIWKSFSDDVPQGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSILLHLL 718
            GS  SF P+   F    P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSAKGKVLMRA+YG++ +TVFVCSI + +L
Sbjct:    6 GSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVL 218          
The following BLAST results are available for this feature:
BLAST of FC875661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH1.751e-6760.19Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI1.301e-5453.52UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ3.787e-5453.52UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionC31401D10EF CTVClemen1 Citrus clementina cDNA clone C31401D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875661 ID=FC875661; Name=FC875661; organism=Citrus clementina; type=EST; length=723bp
GAGGACGCAATAGTGTCTCTAACGCGTCTGCGAAATTTCCTAAGATTTTC
GAGTACTGATTTCGCAAATCCATCAAAATGAGTCGCCCCCAGGATCCACA
CCGTCCTTTCTTCCCATTTGGAAATCCTTTTCGGATGATGTCCCCCAAGG
TTCTCGTTTGTCTCCCAAGCTTGTATCTCTGTTGGCTGATTTTGAGGAGA
CCTTGGCAGAGAGGCTGAGAAAACTTATGCCGAAAGACAAGGATGATATC
CTCAACTTATCATGGATGAGACTGGCAATGGAGTCACTTTGTGAGACTCA
CAATGTCATAAAAGACCTTATAACTGAGTTGGAGCTTCCTGTAAGTGACT
GGGATGAGAAATGGATAGACGTGTACTTAGACATCAGTGTAAACTTGCTT
GATATATGCATTGCTTTTAGCTCTGTTCTCACGAAGGTCAGCCAAGGCCA
CCTATTGCTTCAGTGTGTCTTGCACACTTTGGATTCTTCCTCTCCAACAC
AGTTTGGGCGAGCCTGTTCTTCTCTTGATAACTGGAGGGAGCACATTAGT
TCAAAGAACCCCAGAGTTGAGAGCTGTCGTTCAATCTTAGACAATCTGGT
AGCTTCTTTGGATTTGCCCAAGGTTAAGAACTCAGCCAAAGGGAAGGTTT
TGATGCGCGCAATGTATGGGGTTAAGGTGTTGACTGTATTTGTTTGTAGT
ATTTTGCTGCACCTTCTCTGGAT
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