FC875672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_DROME (Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25 Identity = 83/223 (37.22%), Postives = 116/223 (52.02%), Query Frame = 3 Query: 12 TSSNIGAFDVSKLQKLRNK--GGKKTDTVVSKGSNPDPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESM---MDKXXXXXXXXXXXXXXXXGKHNKPDAK-KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647 T S + + K +KLR K KKT SK S P+ K KK RVWD +S + LD + P NI E + + +D + K K G S F+ I G + ADL+PAL+ ++D L++KNVA EIA KLC+SVAASL+GK++ +F I+S V+ A+ E+LVRIL+P+R IDI+RD +K +PY Sbjct: 177 TGSPMDKIIMEKRRKLREKLTPTKKTSPSDSKSSKPE---KAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESEDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPY 396
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_MOUSE (Signal recognition particle receptor subunit alpha OS=Mus musculus GN=Srpr PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 67/207 (32.37%), Postives = 107/207 (51.69%), Query Frame = 3 Query: 45 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXG--KHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647 K ++ K GK D + PK+K K RVW+ +K LD++ P NG+ + D G ++ KP A K G M + + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+ A+ +++PY Sbjct: 212 KREEFIQKHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINLIRGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPY 417
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_DICDI (Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum GN=srpr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 72/211 (34.12%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 63 NKGGKKTDTVVSKGSNPDPKKKIT------------KKNRVWDDSPPESK----LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647 N K T V++ N KKK+ KK R W+D K L+ +D NG+ I E MD ++ +AK F F + G +DK DLEP L K L KNVA ++A+K+ +S+ LEGKKLA+F ++S+V+ ME+ + RILTP+R+IDILR+V A K +R PY Sbjct: 214 NGATKNQQTDVARIENSGYKKKVKDTPDKQASSSTGKKARTWEDGKLSKKELEALNRSD--NSNGTEIVREKIQKFNIDMD-------------VSSSDDDDEEEAKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PY 408
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_CANFA (Signal recognition particle receptor subunit alpha OS=Canis familiaris GN=SRPR PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20 Identity = 67/227 (29.52%), Postives = 111/227 (48.90%), Query Frame = 3 Query: 45 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVW----------------------DDSPPE--SKLDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647 K ++ K G+ + + PK+K K RVW D +PPE + + T P GG +++ ++D E+ + +KP A K G M + + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+ A+ ++PY Sbjct: 213 KREEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGAPDAAPPEDINLIRGTGP-GGQLQDLDCSSSDDEETAQNA-------------------SKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPY 419
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_BOVIN (Signal recognition particle receptor subunit alpha OS=Bos taurus GN=SRPR PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20 Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 3 Query: 96 SKGSNPD-PKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE-------VEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647 SK S D PK+K K RVW S + LD++ P + G + D KP A K G M + + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+ A+ ++PY Sbjct: 230 SKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPTTNGAPEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQ-----NSTKPSATKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPY 420
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_HUMAN (Signal recognition particle receptor subunit alpha OS=Homo sapiens GN=SRPR PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19 Identity = 66/221 (29.86%), Postives = 107/221 (48.42%), Query Frame = 3 Query: 45 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAG----------------GNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647 K ++ K G+ + + PK+K K RVW+ +K LD++ P G GS +++ D S KP A K G M + + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+ A+ +++PY Sbjct: 213 KREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSS--------------DDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPY 419
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_SCHPO (Signal recognition particle receptor subunit alpha homolog OS=Schizosaccharomyces pombe GN=srp101 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15 Identity = 58/200 (29.00%), Postives = 89/200 (44.50%), Query Frame = 3 Query: 60 RNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK---LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA-KEQRKPY 647 +N+ K SK +N K K K+ R WDD E + L+++ A ++ +K + K S+F ++ G L + DL P LK +++ L KNVA IA +LCESV ASL KK+ SF + + V A + L +ILTP S+D+L + + K + +PY Sbjct: 146 KNEYEMKKKGAQSKQTNAPKKGK--KQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQLSSIVGNNNKFQKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPY 343
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_YEAST (Signal recognition particle receptor subunit alpha homolog OS=Saccharomyces cerevisiae GN=SRP101 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14 Identity = 54/206 (26.21%), Postives = 105/206 (50.97%), Query Frame = 3 Query: 51 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNK----PDAKKTGWFSSMF----QSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 638 +KLR+ GKK T N +K + + D+ E +KLDF+ N S + +++ + +S D+ ++ +AK +G+ S+ F + + G ++++DL+ L+ L +L+TKNVA E A+ L + V+ L G K A++T + + + ++ +AL +ILTP S+D+LR++ + + ++ Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVALDSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGNEAKNSGYVSTAFGFLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTPGVSVDLLREIQSKRSKK 389 The following BLAST results are available for this feature:
BLAST of FC875672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875672 ID=FC875672; Name=FC875672; organism=Citrus clementina; type=EST; length=685bpback to top |