FC875672

Overview
NameFC875672
Unique NameFC875672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6699 contig Ccv1_Contig6699:931..1615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_DROME (Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 83/223 (37.22%), Postives = 116/223 (52.02%), Query Frame = 3
Query:   12 TSSNIGAFDVSKLQKLRNK--GGKKTDTVVSKGSNPDPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESM---MDKXXXXXXXXXXXXXXXXGKHNKPDAK-KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647
            T S +    + K +KLR K    KKT    SK S P+   K  KK RVWD   +S   + LD +   P      NI  E     + +   +D                  +      K K G   S F+ I G   +  ADL+PAL+ ++D L++KNVA EIA KLC+SVAASL+GK++ +F  I+S V+ A+ E+LVRIL+P+R IDI+RD   +K   +PY
Sbjct:  177 TGSPMDKIIMEKRRKLREKLTPTKKTSPSDSKSSKPE---KAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESEDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPY 396          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_MOUSE (Signal recognition particle receptor subunit alpha OS=Mus musculus GN=Srpr PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 67/207 (32.37%), Postives = 107/207 (51.69%), Query Frame = 3
Query:   45 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXG--KHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647
            K ++   K GK  D       +  PK+K  K  RVW+     +K  LD++ P   NG+     + D                        G  ++ KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+ +++PY
Sbjct:  212 KREEFIQKHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINLIRGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPY 417          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_DICDI (Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum GN=srpr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 72/211 (34.12%), Postives = 101/211 (47.87%), Query Frame = 3
Query:   63 NKGGKKTDTVVSKGSNPDPKKKIT------------KKNRVWDDSPPESK----LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647
            N   K   T V++  N   KKK+             KK R W+D     K    L+ +D    NG+ I  E        MD                    ++ +AK    F   F  + G   +DK DLEP L   K  L  KNVA ++A+K+ +S+   LEGKKLA+F  ++S+V+  ME+ + RILTP+R+IDILR+V A K +R PY
Sbjct:  214 NGATKNQQTDVARIENSGYKKKVKDTPDKQASSSTGKKARTWEDGKLSKKELEALNRSD--NSNGTEIVREKIQKFNIDMD-------------VSSSDDDDEEEAKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PY 408          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_CANFA (Signal recognition particle receptor subunit alpha OS=Canis familiaris GN=SRPR PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 67/227 (29.52%), Postives = 111/227 (48.90%), Query Frame = 3
Query:   45 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVW----------------------DDSPPE--SKLDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647
            K ++   K G+  +       +  PK+K  K  RVW                      D +PPE  + +  T P GG   +++  ++D  E+  +                    +KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+  ++PY
Sbjct:  213 KREEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGAPDAAPPEDINLIRGTGP-GGQLQDLDCSSSDDEETAQNA-------------------SKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPY 419          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_BOVIN (Signal recognition particle receptor subunit alpha OS=Bos taurus GN=SRPR PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 3
Query:   96 SKGSNPD-PKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE-------VEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647
            SK S  D PK+K  K  RVW    S  +  LD++ P                +     G  + D                     KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+  ++PY
Sbjct:  230 SKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPTTNGAPEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQ-----NSTKPSATKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPY 420          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_HUMAN (Signal recognition particle receptor subunit alpha OS=Homo sapiens GN=SRPR PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 66/221 (29.86%), Postives = 107/221 (48.42%), Query Frame = 3
Query:   45 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAG----------------GNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 647
            K ++   K G+  +       +  PK+K  K  RVW+     +K  LD++ P                  G GS  +++  D   S                        KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+ +++PY
Sbjct:  213 KREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSS--------------DDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPY 419          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_SCHPO (Signal recognition particle receptor subunit alpha homolog OS=Schizosaccharomyces pombe GN=srp101 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 58/200 (29.00%), Postives = 89/200 (44.50%), Query Frame = 3
Query:   60 RNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK---LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA-KEQRKPY 647
            +N+   K     SK +N   K K  K+ R WDD   E +   L+++  A      ++           +K                  +     K      S+F ++ G   L + DL P LK +++ L  KNVA  IA +LCESV ASL  KK+ SF  + + V  A  + L +ILTP  S+D+L  + +  K + +PY
Sbjct:  146 KNEYEMKKKGAQSKQTNAPKKGK--KQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQLSSIVGNNNKFQKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPY 343          
BLAST of FC875672 vs. ExPASy Swiss-Prot
Match: SRPR_YEAST (Signal recognition particle receptor subunit alpha homolog OS=Saccharomyces cerevisiae GN=SRP101 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 54/206 (26.21%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   51 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNK----PDAKKTGWFSSMF----QSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 638
            +KLR+  GKK  T      N    +K  +   + D+   E  +KLDF+     N S + +++  + +S  D+                   ++     +AK +G+ S+ F    + + G   ++++DL+  L+ L  +L+TKNVA E A+ L + V+  L G K A++T + +  + ++ +AL +ILTP  S+D+LR++ + + ++
Sbjct:  189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVALDSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGNEAKNSGYVSTAFGFLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTPGVSVDLLREIQSKRSKK 389          
The following BLAST results are available for this feature:
BLAST of FC875672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SRPR_DROME7.476e-2537.22Signal recognition particle receptor subunit alpha... [more]
SRPR_MOUSE6.549e-2132.37Signal recognition particle receptor subunit alpha... [more]
SRPR_DICDI6.549e-2134.12Signal recognition particle receptor subunit alpha... [more]
SRPR_CANFA5.544e-2029.52Signal recognition particle receptor subunit alpha... [more]
SRPR_BOVIN5.544e-2032.65Signal recognition particle receptor subunit alpha... [more]
SRPR_HUMAN1.235e-1929.86Signal recognition particle receptor subunit alpha... [more]
SRPR_SCHPO5.370e-1529.00Signal recognition particle receptor subunit alpha... [more]
SRPR_YEAST2.041e-1426.21Signal recognition particle receptor subunit alpha... [more]
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Properties
Property NameValue
Genbank descriptionC31401E09EF CTVClemen1 Citrus clementina cDNA clone C31401E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875672 ID=FC875672; Name=FC875672; organism=Citrus clementina; type=EST; length=685bp
GTAAAGAAAATACTAGTTCTAATATTGGGGCTTTTGATGTAAGTAAGTTA
CAGAAGTTAAGAAATAAAGGTGGTAAGAAAACTGATACTGTTGTTAGCAA
GGGTTCAAATCCAGACCCAAAGAAAAAGATAACAAAGAAGAACAGAGTTT
GGGACGATTCGCCTCCAGAGTCCAAATTGGACTTCACGGATCCTGCAGGT
GGAAATGGCAGTAATATCGAGGTTGAGGCGGCAGATCATGGTGAAAGTAT
GATGGACAAGGAAGAGGTTTTCAGCAGTGATAGTGAATCCGAAGAAGATG
AAGAAGTGGGTAAGCACAACAAGCCTGATGCTAAGAAGACGGGCTGGTTT
TCATCTATGTTCCAGAGTATTGCTGGAAAGGCAAACTTGGATAAGGCAGA
CCTTGAACCCGCTCTGAAAGCTCTCAAGGATAGGCTCATGACCAAGAATG
TTGCTGAGGAGATAGCTGAGAAACTTTGTGAATCAGTTGCAGCAAGTCTT
GAAGGCAAAAAGCTGGCCTCATTTACAAGGATTTCTTCAATTGTGCAGGC
TGCAATGGAAGAGGCTCTTGTTCGCATTTTAACTCCTAGGCGTTCCATTG
ATATATTAAGAGATGTTCACGCTGCCAAGGAACAACGGAAGCCATATGTA
GTTGTTTTCGTTGGTGTTAATGGAGTTGGGAAATC
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